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// ______ ______ _ _ _____ ______ |
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// | ____| ____| | (_)/ ____| | ____| |
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// | |__ | |__ | | _| (___ ___| |__ |
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// | __| | __| | | | |\___ \ / __| __| |
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// | | | |____| |____| |____) | (__| |____ |
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// |_| |______|______|_|_____/ \___|______| |
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// Finite Elements for Life Sciences and Engineering |
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// |
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// License: LGL2.1 License |
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// FELiScE default license: LICENSE in root folder |
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// |
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// Main authors: E. Schenone |
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// |
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#ifndef _LinearProblemBidomainThorax_HPP |
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#define _LinearProblemBidomainThorax_HPP |
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// System includes |
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#include <vector> |
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// External includes |
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// Project includes |
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#include "Solver/linearProblem.hpp" |
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#include "Solver/cardiacFunction.hpp" |
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#include "Core/felisceParam.hpp" |
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#include "DegreeOfFreedom/boundaryCondition.hpp" |
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#include "FiniteElement/elementMatrix.hpp" |
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#ifdef FELISCE_WITH_CVGRAPH |
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#include "Model/cvgMainSlave.hpp" |
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#endif |
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namespace felisce { |
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/*! |
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\class LinearProblemBidomainThorax |
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\authors E. Schenone |
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\date 05/03/2012 |
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\brief Manage the diffusion probleme in the thorax : useful to calculate the heart-torso (transpose) transfer matrix |
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*/ |
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class LinearProblemBidomainThorax: |
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public LinearProblem { |
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public: |
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LinearProblemBidomainThorax(); |
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~LinearProblemBidomainThorax() override; |
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void initialize(std::vector<GeometricMeshRegion::Pointer>& mesh, FelisceTransient::Pointer fstransient, MPI_Comm& comm, bool doUseSNES) override; |
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void initPerElementType(ElementType eltType, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs) override; |
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void initPerDomain(int label, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs) override { |
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m_currentLabel=label; |
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IGNORE_UNUSED_FLAG_MATRIX_RHS; |
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} |
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void computeElementArray(const std::vector<Point*>& elemPoint, const std::vector<felInt>& elemIdPoint, felInt& iel, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs) override; |
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void readData(IO& io) override; |
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void writeSolution(int rank, std::vector<IO::Pointer>& io, double& time, int iteration) override; |
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void finalizeEssBCTransientDerivedProblem() override; |
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void allocateVectorBoundaryConditionDerivedLinPb() override; |
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void userElementComputeNaturalBoundaryCondition(const std::vector<Point*>& elemPoint, const std::vector<felInt>& elemIdPoint,felInt& iel, int label) override; |
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void readElectrodesNode(bool flagTranspos=true); |
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void calculateRHS(); |
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felInt readMatch(std::vector<felInt>& matchNode, std::string matchFileName); |
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void readHeartValue(std::vector<double>& scalarValue); |
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virtual void calculateRes(); |
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inline const PetscVector& residual() const { |
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return m_thoraxRes; |
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} |
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inline PetscVector& residual() { |
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return m_thoraxRes; |
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} |
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inline const PetscVector& robinVec() const { |
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return m_robinVec; |
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} |
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inline PetscVector& robinVec() { |
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return m_robinVec; |
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} |
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void computeElementArrayBoundaryCondition(const std::vector<Point*>& elemPoint, const std::vector<felInt>& /*elemIdPoint*/, felInt& iel, FlagMatrixRHS /*flagMatrixRHS*/) override; |
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#ifdef FELISCE_WITH_CVGRAPH |
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void initMassBoundaryForCVG(); |
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void massMatrixComputer(felInt ielSupportDof); |
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void initPerETMass(); |
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void updateFE(const std::vector<Point*>& elemPoint, const std::vector<int>&); |
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#endif |
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public: |
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#ifdef FELISCE_WITH_CVGRAPH |
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void readData() override; |
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void sendData(); |
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void initMatrix(); |
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void addCurrentToRHS(); |
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virtual void cvgAddRobinToRHS(); |
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#endif |
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template <class Templ_functor> void evalFunctionOnElem(const Templ_functor& func, double& value, int& label); |
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private: |
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CurrentFiniteElement* m_fePotThorax; |
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felInt m_ipotThorax; |
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// PetscMatrix _RomBasisMatrix; |
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protected: |
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double* m_potThoraxRes; |
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int m_numBcNodeThorax; |
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felInt* _ECGnode; |
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felInt m_numSourceNode; |
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std::vector<felInt> m_thoraxMatchNode; |
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std::vector<felInt> m_heartMatchNode; |
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PetscVector m_thoraxRes; |
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PetscVector m_robinVec; |
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CurvilinearFiniteElement* m_curvFe; |
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}; |
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template <class Templ_functor> void LinearProblemBidomainThorax::evalFunctionOnElem(const Templ_functor& func, double& value, int& label) { |
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value = func(label); |
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} |
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} |
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#endif |
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