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// ______ ______ _ _ _____ ______ |
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// | ____| ____| | (_)/ ____| | ____| |
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// | |__ | |__ | | _| (___ ___| |__ |
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// | __| | __| | | | |\___ \ / __| __| |
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// | | | |____| |____| |____) | (__| |____ |
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// |_| |______|______|_|_____/ \___|______| |
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// Finite Elements for Life Sciences and Engineering |
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// |
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// License: LGL2.1 License |
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// FELiScE default license: LICENSE in root folder |
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// |
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// Main authors: A. Collin |
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// |
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#ifndef _LinearProblemBidomainExtraCell_HPP |
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#define _LinearProblemBidomainExtraCell_HPP |
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// System includes |
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#include <vector> |
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// External includes |
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// Project includes |
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#include "Solver/linearProblem.hpp" |
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#include "Core/felisceParam.hpp" |
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#include "Solver/bdf.hpp" |
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#include "Solver/cardiacFunction.hpp" |
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namespace felisce |
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{ |
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/*! |
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\class LinearProblemBidomainExtraCell |
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\authors E. Schenone C. Corrado |
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\date 27/01/2012 |
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\brief ??? |
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*/ |
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class LinearProblemBidomainExtraCell: |
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public LinearProblem { |
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public: |
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LinearProblemBidomainExtraCell(); |
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~LinearProblemBidomainExtraCell() override; |
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void initialize(std::vector<GeometricMeshRegion::Pointer>& mesh, FelisceTransient::Pointer fstransient, MPI_Comm& comm, bool doUseSNES) override; |
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void getFiberDirection(felInt iel, int iUnknown, std::vector<double>& elemFiber); |
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void getAngleFiber(felInt iel, int iUnknown, std::vector<double>& elemAngle); |
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void initPerElementType(ElementType eltType, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs) override; |
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void initPerDomain(int label, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs) override { |
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m_currentLabel=label; |
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IGNORE_UNUSED_FLAG_MATRIX_RHS; |
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} |
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void computeElementArray(const std::vector<Point*>& elemPoint, const std::vector<felInt>& elemIdPoint, felInt& iel, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs) override; |
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void computeElementArrayBoundaryCondition(const std::vector<Point*>& elemPoint, const std::vector<felInt>& elemIdPoint, felInt& iel, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs) override; |
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void readData(IO& io) override; |
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void addMatrixRHS() override; |
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std::vector<double> & EndocardiumDistance() { |
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return m_vectorDistance; |
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} |
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virtual void sortSolution() {} |
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double* sortedSolution() { |
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return m_sortedSol; |
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} |
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protected: |
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CurrentFiniteElement* m_fePotExtraCell; |
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CurvilinearFiniteElement* m_fePotExtraCellCurv; |
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felInt m_ipotExtraCell; |
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double* m_sortedSol; |
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private: |
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double* m_fiber; |
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double* m_angleFiber; |
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double* m_endocardiumDistance; |
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std::vector<double> m_vectorDistance; |
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// bool allocateSeqVec; |
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}; |
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} |
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#endif |
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