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// ______ ______ _ _ _____ ______ |
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// | ____| ____| | (_)/ ____| | ____| |
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// | |__ | |__ | | _| (___ ___| |__ |
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// | __| | __| | | | |\___ \ / __| __| |
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// | | | |____| |____| |____) | (__| |____ |
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// |_| |______|______|_|_____/ \___|______| |
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// Finite Elements for Life Sciences and Engineering |
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// |
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// License: LGL2.1 License |
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// FELiScE default license: LICENSE in root folder |
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// |
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// Main authors: A. Collin |
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// |
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#ifndef _LinearProblemBidomainCurv_HPP |
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#define _LinearProblemBidomainCurv_HPP |
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// System includes |
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#include <vector> |
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// External includes |
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// Project includes |
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#include "Solver/linearProblem.hpp" |
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#include "Core/felisceParam.hpp" |
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#include "Solver/bdf.hpp" |
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#include "Solver/cardiacFunction.hpp" |
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#include "FiniteElement/elementField.hpp" |
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namespace felisce |
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{ |
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/*! |
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\class LinearProblemBidomainCurv |
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\authors A. Collin |
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*/ |
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class LinearProblemBidomainCurv: |
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public LinearProblem { |
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public: |
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LinearProblemBidomainCurv(); |
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~LinearProblemBidomainCurv() override; |
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void initialize(std::vector<GeometricMeshRegion::Pointer>& mesh, FelisceTransient::Pointer fstransient, MPI_Comm& comm, bool doUseSNES) override; |
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void getFiberDirection(felInt iel, int iUnknown, std::vector<double>& elemFiber); |
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void getAngle(felInt iel, int iUnknown, std::vector<double>& elemAngle); |
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void getData(felInt iel, int iUnknown, std::vector<double>& elemData); |
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void initPerElementTypeBD(ElementType eltType, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs) override; |
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void initPerDomainBD(int label, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs) override { |
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IGNORE_UNUSED_FLAG_MATRIX_RHS; |
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m_currentLabel=label; |
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} |
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double conductivityHet(int currentLabel); |
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double conductivityHom(int currentLabel); |
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void computeElementArrayBD(const std::vector<Point*>& elemPoint, const std::vector<felInt>& elemIdPoint, felInt& iel, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs) override; |
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void initLevelSet(); |
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void levelSet(double min, double max); |
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void initSolutionTimeBef(); |
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void solutionTimeBef(); |
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// void initializeElecPhy(SchafSolver* schaf){ m_schaf = schaf;} |
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void initializeTimeScheme(Bdf* bdf) override { |
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m_bdf = bdf; |
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} |
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void readData(IO& io) override; |
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void readDataForDA(IO& io, double iteration); |
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std::vector<double> & Reference() { |
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return m_vectorRef; |
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} |
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double averageLS(CurvilinearFiniteElement* fePtr, int idfe, int minus); |
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virtual void sortSolution() {} |
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double* sortedSolution() { |
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return m_sortedSol; |
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} |
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virtual void readMatch(){} |
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virtual void readElectrodeMeasure(){} |
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virtual void addElectrodeCondtrol(){} |
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void addMatrixRHS() override; |
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void writeEnsightScalar(double* solValue, int idIter, std::string varName); |
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void writeEnsightCase(int numIt, std::string varName); |
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protected: |
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CurvilinearFiniteElement* m_fePotTransMemb; |
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CurvilinearFiniteElement* m_fePotExtraCell; |
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felInt m_ipotTransMemb; |
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felInt m_ipotExtraCell; |
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double* m_sortedSol; |
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private: |
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// SchafSolver* m_schaf; |
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Bdf* m_bdf; |
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std::vector<double> m_vectorFiber; |
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std::vector<double> m_vectorAngle; |
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std::vector<double> m_vectorRef; |
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std::vector<double> m_data; |
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PetscVector m_seqIon; |
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PetscVector m_seqBdfRHS; |
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bool allocateSeqVec; |
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bool allocateLevelSet; |
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bool allocateSol_n_1; |
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PetscVector m_levelSet; |
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PetscVector m_levelSetSeq; |
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PetscVector m_sol_n_1; |
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// felInt m_size; |
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// ISLocalToGlobalMapping m_localDofToGlobalDof; |
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ElementField m_elemFieldLSVm; |
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ElementField m_elemFieldVm; |
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double m_avHeavU0; |
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double m_avHeavMinusU0; |
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}; |
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} |
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#endif |
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