| Directory: | ./ |
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| File: | Solver/linearProblem.hpp |
| Date: | 2024-04-14 07:32:34 |
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| Lines: | 88 | 134 | 65.7% |
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| 1 | // ______ ______ _ _ _____ ______ | ||
| 2 | // | ____| ____| | (_)/ ____| | ____| | ||
| 3 | // | |__ | |__ | | _| (___ ___| |__ | ||
| 4 | // | __| | __| | | | |\___ \ / __| __| | ||
| 5 | // | | | |____| |____| |____) | (__| |____ | ||
| 6 | // |_| |______|______|_|_____/ \___|______| | ||
| 7 | // Finite Elements for Life Sciences and Engineering | ||
| 8 | // | ||
| 9 | // License: LGL2.1 License | ||
| 10 | // FELiScE default license: LICENSE in root folder | ||
| 11 | // | ||
| 12 | // Main authors: J. Foulon & J-F. Gerbeau & V. Martin | ||
| 13 | // | ||
| 14 | |||
| 15 | #ifndef LINEARPROBLEM_HPP | ||
| 16 | #define LINEARPROBLEM_HPP | ||
| 17 | |||
| 18 | // System includes | ||
| 19 | #include <unordered_set> | ||
| 20 | #include <vector> | ||
| 21 | #include <numeric> | ||
| 22 | |||
| 23 | // External includes | ||
| 24 | #include <parmetis.h> | ||
| 25 | #include "Core/NoThirdPartyWarning/Petsc/ao.hpp" | ||
| 26 | #include "Core/NoThirdPartyWarning/Petsc/error.hpp" | ||
| 27 | |||
| 28 | // Project includes | ||
| 29 | #include "PETScInterface/petscVector.hpp" | ||
| 30 | #include "PETScInterface/petscMatrix.hpp" | ||
| 31 | #include "PETScInterface/KSPInterface.hpp" | ||
| 32 | #include "PETScInterface/SNESInterface.hpp" | ||
| 33 | #include "Core/felisce.hpp" | ||
| 34 | #include "Core/shared_pointers.hpp" | ||
| 35 | #include "Core/felisceTools.hpp" | ||
| 36 | #include "Core/mpiInfo.hpp" | ||
| 37 | #include "Core/felisceTransient.hpp" | ||
| 38 | #include "DegreeOfFreedom/boundaryConditionList.hpp" | ||
| 39 | #include "DegreeOfFreedom/listVariable.hpp" | ||
| 40 | #include "DegreeOfFreedom/listUnknown.hpp" | ||
| 41 | #include "DegreeOfFreedom/supportDofMesh.hpp" | ||
| 42 | #include "DegreeOfFreedom/dof.hpp" | ||
| 43 | #include "DegreeOfFreedom/csrmatrixpattern.hpp" | ||
| 44 | #include "DegreeOfFreedom/dofBoundary.hpp" | ||
| 45 | #include "FiniteElement/elementVector.hpp" | ||
| 46 | #include "FiniteElement/elementMatrix.hpp" | ||
| 47 | #include "FiniteElement/listCurrentFiniteElement.hpp" | ||
| 48 | #include "FiniteElement/listCurrentFiniteElementWithBd.hpp" | ||
| 49 | #include "FiniteElement/listCurvilinearFiniteElement.hpp" | ||
| 50 | #include "Geometry/geometricMeshRegion.hpp" | ||
| 51 | #include "Geometry/point.hpp" | ||
| 52 | #include "InputOutput/io.hpp" | ||
| 53 | #include "Solver/CVGraphInterface.hpp" | ||
| 54 | #ifdef FELISCE_WITH_CVGRAPH | ||
| 55 | #include "Model/cvgMainSlave.hpp" | ||
| 56 | #endif | ||
| 57 | |||
| 58 | namespace felisce | ||
| 59 | { | ||
| 60 | ///@name felisce Globals | ||
| 61 | ///@{ | ||
| 62 | |||
| 63 | ///@} | ||
| 64 | ///@name Enum's | ||
| 65 | ///@{ | ||
| 66 | |||
| 67 | enum class FlagMatrixRHS : int | ||
| 68 | { | ||
| 69 | matrix_and_rhs = 0, | ||
| 70 | only_matrix = 1, | ||
| 71 | only_rhs = 2 | ||
| 72 | }; | ||
| 73 | |||
| 74 | namespace DirichletApplicationOptions { | ||
| 75 | enum Values { | ||
| 76 | nonSymmetricPseudoElimination = 0, | ||
| 77 | symmetricPseudoElimination = 1, | ||
| 78 | penalization = 2 | ||
| 79 | }; | ||
| 80 | } | ||
| 81 | |||
| 82 | enum class ApplyNaturalBoundaryConditions { | ||
| 83 | no, | ||
| 84 | yes | ||
| 85 | }; | ||
| 86 | |||
| 87 | ///@} | ||
| 88 | ///@name Type Definitions | ||
| 89 | ///@{ | ||
| 90 | |||
| 91 | // Forward declarations. | ||
| 92 | class Model; | ||
| 93 | class FelisceParam; | ||
| 94 | class FelisceTransient; | ||
| 95 | // class IO; | ||
| 96 | class Bdf; | ||
| 97 | class LumpedModelBC; | ||
| 98 | class CardiacCycle; | ||
| 99 | class RISModel; | ||
| 100 | class ElementField; | ||
| 101 | class BoundaryCondition; | ||
| 102 | #ifdef FELISCE_WITH_CVGRAPH | ||
| 103 | class cvgMainSlave; | ||
| 104 | #endif | ||
| 105 | |||
| 106 | typedef ApplyNaturalBoundaryConditions ApplyNaturalBoundaryConditionsType; | ||
| 107 | |||
| 108 | ///@} | ||
| 109 | ///@name Functions | ||
| 110 | ///@{ | ||
| 111 | |||
| 112 | ///@} | ||
| 113 | ///@name felisce Classes | ||
| 114 | ///@{ | ||
| 115 | |||
| 116 | // SNES staff | ||
| 117 | class SnesContext { | ||
| 118 | public: | ||
| 119 | SnesContext()= default;; | ||
| 120 | void initialize(LinearProblem& linearProblem, int rankProc, int sizeProc, | ||
| 121 | ApplyNaturalBoundaryConditionsType do_apply_natural, | ||
| 122 | FlagMatrixRHS flag); | ||
| 123 | |||
| 124 | LinearProblem* linearProblem; | ||
| 125 | int rankProc; | ||
| 126 | int sizeProc; | ||
| 127 | ApplyNaturalBoundaryConditionsType do_apply_natural; | ||
| 128 | FlagMatrixRHS flag_matrix_rhs; | ||
| 129 | }; | ||
| 130 | |||
| 131 | /*! | ||
| 132 | \class LinearProblem | ||
| 133 | \authors J. Foulon & J-F. Gerbeau & V. Martin | ||
| 134 | \date 05/01/2011 | ||
| 135 | \brief Manage general functions of an EDP problem. | ||
| 136 | */ | ||
| 137 | class LinearProblem | ||
| 138 | { | ||
| 139 | public: | ||
| 140 | ///@name Type Definitions | ||
| 141 | ///@{ | ||
| 142 | |||
| 143 | typedef GeometricMeshRegion::ElementType ElementType; | ||
| 144 | |||
| 145 | /// Two types of PetsVec, to improve readibility | ||
| 146 | enum vectorType { sequential, ///< Sequential vectors | ||
| 147 | parallel ///< Parallel vectors | ||
| 148 | }; | ||
| 149 | |||
| 150 | /// Pointer definition of LinearProblem | ||
| 151 | FELISCE_CLASS_POINTER_DEFINITION(LinearProblem); | ||
| 152 | |||
| 153 | ///@} | ||
| 154 | ///@name Life Cycle | ||
| 155 | ///@{ | ||
| 156 | |||
| 157 | /*! | ||
| 158 | * \brief Constructor | ||
| 159 | * | ||
| 160 | * \param[in] name Name of the linear problem | ||
| 161 | * \param[in] numMat Number of matrices | ||
| 162 | * \param[in] numVec Number of rhs | ||
| 163 | */ | ||
| 164 | LinearProblem(const std::string name = "No name", const std::size_t numMat = 1, const std::size_t numVec = 1); | ||
| 165 | |||
| 166 | /*! | ||
| 167 | * \brief Destructor | ||
| 168 | */ | ||
| 169 | virtual ~LinearProblem(); | ||
| 170 | |||
| 171 | ///@} | ||
| 172 | ///@name Operators | ||
| 173 | ///@{ | ||
| 174 | |||
| 175 | ///@} | ||
| 176 | ///@name Operations | ||
| 177 | ///@{ | ||
| 178 | |||
| 179 | /*! | ||
| 180 | * \brief Initialization steps. Beware: all quantities may not be initialised there. | ||
| 181 | * | ||
| 182 | * \param[in] mesh The vector of meshes | ||
| 183 | * \param[in] fstransient TODO | ||
| 184 | * \param[in] comm TODO | ||
| 185 | * \param[in] doUseSNES True if you handling a non linear problem and are willing to use Petsc Newton-Raphson method. False in most of the current cases! | ||
| 186 | */ | ||
| 187 | virtual void initialize(std::vector<GeometricMeshRegion::Pointer>& /*mesh*/, FelisceTransient::Pointer /*fstransient*/, MPI_Comm& /*comm*/, bool /*doUseSNES*/) = 0; | ||
| 188 | |||
| 189 | /*! | ||
| 190 | * \brief Init few quantities. | ||
| 191 | * | ||
| 192 | * Init a handful of attributes. | ||
| 193 | * | ||
| 194 | * This method is usually called in the beginning of the virtual #initialize() defined just above (\todo | ||
| 195 | * This design is error prone; it should be reversed: a non virtual initialize which includes a call to | ||
| 196 | * a virtual method that can be overloaded. Hence there would be no risk of forgetting the call of present method...) | ||
| 197 | * | ||
| 198 | * \param[in] doUseSNES True if you handling a non linear problem and are willing to use Petsc Newton-Raphson method. | ||
| 199 | */ | ||
| 200 | void initialize(std::vector<GeometricMeshRegion::Pointer>& mesh, MPI_Comm& comm, bool doUseSNES); | ||
| 201 | |||
| 202 | /*! | ||
| 203 | * \brief Finalizes the linear problem | ||
| 204 | */ | ||
| 205 | 16 | virtual void finalize(std::vector<GeometricMeshRegion::Pointer>& /*mesh*/, FelisceTransient::Pointer /*fstransient*/, MPI_Comm& /*comm*/) {} | |
| 206 | |||
| 207 | /*! | ||
| 208 | * \brief Initialize some attributes at the very end of the #Model::initializeLinearProblem() method. | ||
| 209 | * | ||
| 210 | * Rationale: for Elasticity and HyperElasticity, I need to set the values of attributes but can't do it | ||
| 211 | * in #initialize() because some of the quantities I need (namely the boundary conditions and the dof) aren't | ||
| 212 | * defined yet. | ||
| 213 | */ | ||
| 214 | 184 | virtual void InitializeDerivedAttributes() {} | |
| 215 | |||
| 216 | /*! | ||
| 217 | * \brief Set the ID of the problem solver | ||
| 218 | */ | ||
| 219 | 513 | inline void fixIdOfTheProblemSolver(int const id) { m_identifier_solver = id; }; | |
| 220 | |||
| 221 | |||
| 222 | |||
| 223 | // Define Physical Variable associate to the problem | ||
| 224 | //================================================== | ||
| 225 | void definePhysicalVariable(const std::vector<PhysicalVariable>& listVariable, const std::vector<std::size_t>& listNumComp); | ||
| 226 | |||
| 227 | 72 | virtual void userAddOtherVariables(std::vector<PhysicalVariable>& /*listVariable*/, std::vector<std::size_t>& /*listNumComp*/) {} | |
| 228 | |||
| 229 | 70 | virtual void userAddOtherUnknowns(std::vector<PhysicalVariable>& /*listVariable*/, std::vector<std::size_t>& /*listNumComp*/) {} | |
| 230 | |||
| 231 | |||
| 232 | |||
| 233 | // Compute Dof | ||
| 234 | //============ | ||
| 235 | |||
| 236 | /** | ||
| 237 | * @brief Compute global degrees of freedom with global support dof creation. | ||
| 238 | * Build pattern of the matrix. | ||
| 239 | */ | ||
| 240 | void computeDof(int numProc, int idProc); | ||
| 241 | |||
| 242 | /** | ||
| 243 | * @brief Change pattern function | ||
| 244 | */ | ||
| 245 | 437 | virtual void userChangePattern(int /*numProc*/, int /*rankProc*/) {}; | |
| 246 | |||
| 247 | /** | ||
| 248 | * @brief Initialize supprtDof in derived problem | ||
| 249 | */ | ||
| 250 | 511 | virtual void initSupportDofDerivedProblem() {}; | |
| 251 | |||
| 252 | /// for one element and a local suppordof id, find coordinate of support. | ||
| 253 | void getSupportCoordinate(ElementType& eltType, felInt iel, felInt idSupport, int iUnknown, Point& pt); | ||
| 254 | |||
| 255 | /// for one element and a local suppordof id, find coordinate of support. | ||
| 256 | void getSupportCoordinate(felInt idElt, felInt idSupport, int iUnknown, Point& pt); | ||
| 257 | |||
| 258 | |||
| 259 | |||
| 260 | // Partition function | ||
| 261 | //=================== | ||
| 262 | |||
| 263 | /** | ||
| 264 | * @brief After partitionning we obtain element repartition and we create mesh region and "region" support dof. | ||
| 265 | */ | ||
| 266 | void cutMesh(); | ||
| 267 | |||
| 268 | /** | ||
| 269 | * @brief use ParMetis to partition dof (line of the matrix). | ||
| 270 | * The function call parmetis to compute the dof partition which is stored in m_dofPart. | ||
| 271 | * Next, the application ordering (AO) used to fo from the global felisce ordering to the global petsc ordering | ||
| 272 | * is created. | ||
| 273 | * Finaly, the element partition is created and is store in m_eltPart. | ||
| 274 | * @param[in] numPart Number of process. | ||
| 275 | * @param[in] rankPart Rank of the current process. | ||
| 276 | * @param[in] comm MPI communicator. | ||
| 277 | */ | ||
| 278 | void partitionDof(idx_t numPart, int rankPart, MPI_Comm comm); | ||
| 279 | // void partitionDof_Petsc(idx_t numPart, int rankPart, MPI_Comm comm); | ||
| 280 | |||
| 281 | |||
| 282 | |||
| 283 | // Build Mesh and SupportDofMesh local with partition arrays | ||
| 284 | //========================================================== | ||
| 285 | |||
| 286 | /** | ||
| 287 | * @brief Create the local mesh and local supportDofMesh-> Create the local to global mapping for the elements | ||
| 288 | * One element is on rankPart if the majority of its dof is in the process. | ||
| 289 | * All points of the mesh are duplicated. | ||
| 290 | * @param[in] rankPart Rank of the current process. | ||
| 291 | */ | ||
| 292 | void setLocalMeshAndSupportDofMesh(int rankPart); | ||
| 293 | |||
| 294 | |||
| 295 | |||
| 296 | // Allocate Matrix and RHS | ||
| 297 | //======================== | ||
| 298 | |||
| 299 | /** | ||
| 300 | * @brief use the pattern defined with dof to allocate memory for the matrix in CSR format. | ||
| 301 | * This function is indeed allocating the matrix, but it is also creating the rhs, solution, serial solution | ||
| 302 | * vectors. It creates two mappings: | ||
| 303 | * - m_mappingNodes which std::unordered_map the local id to the global id of dofs. | ||
| 304 | * - m_mappingIdLocalDofPerUnknownToIdGlobalDofPetsc which is actually a std::vector of mappings that maps the | ||
| 305 | * local id to the global id in the petsc ordering for each unknown. | ||
| 306 | */ | ||
| 307 | void allocateMatrix(); | ||
| 308 | |||
| 309 | /** | ||
| 310 | * @brief Allocate the serial vector that contains the solution of the linear system. | ||
| 311 | */ | ||
| 312 | void allocateSequentialSolution(); | ||
| 313 | |||
| 314 | |||
| 315 | |||
| 316 | // Assemble Matrix | ||
| 317 | //================ | ||
| 318 | |||
| 319 | /** | ||
| 320 | * @brief elementary loop to build matrix. | ||
| 321 | * This function uses specific functions which are defined in derived problem classes. | ||
| 322 | */ | ||
| 323 | void assembleMatrixRHS(int rank, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs); | ||
| 324 | |||
| 325 | /** | ||
| 326 | * @brief Initialize the currentFiniteElement list. | ||
| 327 | */ | ||
| 328 | void defineFiniteElement(const ElementType& eltType); | ||
| 329 | |||
| 330 | /** | ||
| 331 | * @brief Initialize the currentFiniteElement list. | ||
| 332 | */ | ||
| 333 | void defineFiniteElement(const std::vector<ElementType>& eltType); | ||
| 334 | |||
| 335 | /** | ||
| 336 | * @brief Initialize element array | ||
| 337 | */ | ||
| 338 | void initElementArray(const bool initTranspose=false); | ||
| 339 | |||
| 340 | /** | ||
| 341 | * @brief Initialize the element fields | ||
| 342 | */ | ||
| 343 | ✗ | virtual void initPerElementType(ElementType /*eltType*/, FlagMatrixRHS /*flagMatrixRHS*/ = FlagMatrixRHS::matrix_and_rhs) {}; | |
| 344 | |||
| 345 | /** | ||
| 346 | * @brief Use by user to add some terms like source term define with elemField. | ||
| 347 | */ | ||
| 348 | 7387 | virtual void userElementInit() {}; | |
| 349 | |||
| 350 | /** | ||
| 351 | * @brief Initialize some parameter associated to a mesh region. | ||
| 352 | */ | ||
| 353 | virtual void initPerDomain(int label, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs); | ||
| 354 | |||
| 355 | /** | ||
| 356 | * @brief Get vertices, coordinates and support element of element | ||
| 357 | */ | ||
| 358 | void setElemPoint(ElementType& eltType, felInt iel, std::vector<Point*>& elemPoint, std::vector<felInt>& elemIdPoint, std::vector<felInt>& vectorSupport); | ||
| 359 | |||
| 360 | /** | ||
| 361 | * @brief Get vertices, coordinates and support element of element | ||
| 362 | */ | ||
| 363 | void setElemPoint(ElementType& eltType, felInt iel, std::vector<Point*>& elemPoint, std::vector<felInt>& elemIdPoint, felInt* ielSupportDof); | ||
| 364 | |||
| 365 | /**. | ||
| 366 | * @brief Update finite element with element vertices coordinates and compute operators. | ||
| 367 | */ | ||
| 368 | ✗ | virtual void computeElementArray(const std::vector<Point*>& /*elemPoint*/, const std::vector<felInt>& /*elemIdPoint*/, felInt& /*iel*/, FlagMatrixRHS /*flagMatrixRHS*/ = FlagMatrixRHS::matrix_and_rhs) {}; | |
| 369 | |||
| 370 | /**. | ||
| 371 | * @brief Update finite element with element vertices coordinates and compute operators. | ||
| 372 | */ | ||
| 373 | ✗ | virtual void computeElementArray(const std::vector<Point*>& /*elemPoint*/, const std::vector<felInt>& /*elemIdPoint*/, felInt& /*iel1*/, felInt& /*iel2*/, ElementType& /*eltType*/, felInt& /*ielGeo*/, FlagMatrixRHS /*flagMatrixRHS*/ = FlagMatrixRHS::matrix_and_rhs) {}; | |
| 374 | |||
| 375 | /**. | ||
| 376 | * @brief Update finite element with element vertices coordinates and compute operators for characteristics. | ||
| 377 | */ | ||
| 378 | ✗ | virtual void computeElementArrayCharact(const std::vector<Point*>& /*elemPoint*/, const std::vector<felInt>& /*elemIdPoint*/, felInt& /*iel*/, ElementType& /*eltType*/, felInt& /*ielGeo*/, FlagMatrixRHS /*flagMatrixRHS*/ = FlagMatrixRHS::matrix_and_rhs) {}; | |
| 379 | |||
| 380 | /**. | ||
| 381 | * @brief Compute user defined operators. | ||
| 382 | */ | ||
| 383 | 22641489 | virtual void userElementCompute(const std::vector<Point*>& /*elemPoint*/, const std::vector<felInt>& /*elemIdPoint*/, felInt& /*iel*/, FlagMatrixRHS /*flagMatrixRHS*/ = FlagMatrixRHS::matrix_and_rhs) {}; | |
| 384 | |||
| 385 | /**. | ||
| 386 | * @brief Compute user defined operators. | ||
| 387 | */ | ||
| 388 | 141128 | virtual void userElementCompute(const std::vector<Point*>& /*elemPoint*/, const std::vector<felInt>& /*elemIdPoint*/, felInt& /*iel1*/, felInt& /*iel2*/, ElementType& /*eltType*/, felInt& /*ielGeo*/, FlagMatrixRHS /*flagMatrixRHS*/ = FlagMatrixRHS::matrix_and_rhs) {}; | |
| 389 | |||
| 390 | /**. | ||
| 391 | * @brief Compute user defined operators. | ||
| 392 | */ | ||
| 393 | ✗ | virtual void userElementCompute(const std::vector<Point*>& /*elemPoint*/, const std::vector<felInt>& /*elemIdPoint*/, felInt& /*iel*/, const std::vector<Point*>& /*elemPointVol*/, std::vector<felInt>& /*elemIdPointVol*/, felInt& /*ielVol*/, std::vector<felInt>& /*elemIdPointLocal*/, FlagMatrixRHS /*flagMatrixRHS*/ = FlagMatrixRHS::matrix_and_rhs) {}; | |
| 394 | |||
| 395 | /** | ||
| 396 | * @brief use elementary calculus to fill the global matrix. | ||
| 397 | */ | ||
| 398 | void setValueMatrixRHS(const std::vector<felInt>& ielSupportDof1, const std::vector<felInt>& ielSupportDof2, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs, bool buildMatT=false); | ||
| 399 | |||
| 400 | /** | ||
| 401 | * @brief use elementary calculus to fill the global matrix. | ||
| 402 | */ | ||
| 403 | void setValueMatrixRHS(const felInt ielSupportDof1, const felInt ielSupportDof2, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs, bool buildMatT=false); | ||
| 404 | |||
| 405 | /** | ||
| 406 | * @brief use elementary calculus to fill the global matrix. | ||
| 407 | */ | ||
| 408 | void setValueCustomMatrix(const std::vector<felInt>& ielSupportDof1, const std::vector<felInt>& ielSupportDof2, PetscMatrix& mat, bool buildMatT = false); | ||
| 409 | |||
| 410 | /** | ||
| 411 | * @brief use elementary calculus to fill the global matrix. | ||
| 412 | */ | ||
| 413 | void setValueCustomMatrix(const felInt ielSupportDof1, const felInt ielSupportDof2, PetscMatrix& mat, bool buildMatT = false); | ||
| 414 | |||
| 415 | /** | ||
| 416 | * @brief Function to set the elemVector[0] into a generic vector vec. | ||
| 417 | */ | ||
| 418 | void setValueCustomVector(const std::vector<felInt>& ielSupportDof1, InsertMode mode, PetscVector& vec); | ||
| 419 | |||
| 420 | /** | ||
| 421 | * @brief Function to set the elemVector[0] into a generic vector vec. | ||
| 422 | */ | ||
| 423 | void setValueCustomVector(const felInt ielSupportDof1, InsertMode mode, PetscVector& vec); | ||
| 424 | |||
| 425 | /** | ||
| 426 | * @brief Allocate memory for assemble matrix and rhs. | ||
| 427 | */ | ||
| 428 | void allocateArrayForAssembleMatrixRHS(FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs); | ||
| 429 | |||
| 430 | /** | ||
| 431 | * @brief Desallocate memory for assemble matrix and rhs. | ||
| 432 | */ | ||
| 433 | void desallocateArrayForAssembleMatrixRHS(FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs); | ||
| 434 | |||
| 435 | /** | ||
| 436 | * @brief Assembly loop on boundary element of a certain label in implicit LumpedModelBC | ||
| 437 | */ | ||
| 438 | ✗ | virtual void assembleMatrixImplLumpedModelBC(int /*rank*/, const std::size_t /*iLabel*/) {}; | |
| 439 | |||
| 440 | /** | ||
| 441 | * @brief Assembly loop on crack elements pre-defined | ||
| 442 | */ | ||
| 443 | 27861 | virtual void derivedAssembleMatrixCrackModel(int /*rank*/) {}; | |
| 444 | |||
| 445 | /** | ||
| 446 | * @brief elementary loop to build matrix. | ||
| 447 | * This function uses specific functions which are define in derived problem classes. | ||
| 448 | */ | ||
| 449 | void assembleMatrixRHSBD(int rank, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs); | ||
| 450 | |||
| 451 | /** | ||
| 452 | * @brief Initialize the curvilinearFiniteElement list. | ||
| 453 | */ | ||
| 454 | void defineCurvilinearFiniteElement(const ElementType& eltType); | ||
| 455 | |||
| 456 | /** | ||
| 457 | * @brief Initialize the curvilinearFiniteElement list. | ||
| 458 | */ | ||
| 459 | void defineCurvilinearFiniteElement(const std::vector<ElementType>& eltType); | ||
| 460 | |||
| 461 | /** | ||
| 462 | * @brief Initialize the currentFiniteElementWithBd list. | ||
| 463 | */ | ||
| 464 | void defineCurrentFiniteElementWithBd(const ElementType& eltType); | ||
| 465 | |||
| 466 | /** | ||
| 467 | * @brief Initialize the currentFiniteElementWithBd list. | ||
| 468 | */ | ||
| 469 | void defineCurrentFiniteElementWithBd(const std::vector<ElementType>& eltType); | ||
| 470 | |||
| 471 | /** | ||
| 472 | * @brief Initialize element array | ||
| 473 | */ | ||
| 474 | void initElementArrayBD(const bool initTranspose=false); | ||
| 475 | |||
| 476 | /** | ||
| 477 | * @brief Initialize the element fields | ||
| 478 | */ | ||
| 479 | ✗ | virtual void initPerElementTypeBD(ElementType /*eltType*/, FlagMatrixRHS /*flagMatrixRHS*/ = FlagMatrixRHS::matrix_and_rhs) {}; | |
| 480 | |||
| 481 | /** | ||
| 482 | * @brief Use by user to add some terms like source term define with elemField. | ||
| 483 | */ | ||
| 484 | 8748 | virtual void userElementInitBD() {}; | |
| 485 | |||
| 486 | /** | ||
| 487 | * @brief Initialize some parameter associated to a mesh region. | ||
| 488 | */ | ||
| 489 | virtual void initPerDomainBD(int label, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs); | ||
| 490 | |||
| 491 | /** | ||
| 492 | * @brief Get vertices, coordinates, normal, tangent and support element of element | ||
| 493 | */ | ||
| 494 | void setElemPointNormalTangent(ElementType& eltType, felInt iel,std::vector<Point*>& elemPoint, std::vector<Point*>& elemNormal, | ||
| 495 | std::vector< std::vector<Point*> >& elemTangent, std::vector<felInt>& elemIdPoint, std::vector<felInt>& vectorSupport); | ||
| 496 | |||
| 497 | /**. | ||
| 498 | * @brief Update finite element with element vertices coordinates and compute operators. | ||
| 499 | */ | ||
| 500 | ✗ | virtual void computeElementArrayBD(const std::vector<Point*>& /*elemPoint*/, const std::vector<felInt>& /*elemIdPoint*/, felInt& /*iel*/, FlagMatrixRHS /*flagMatrixRHS*/ = FlagMatrixRHS::matrix_and_rhs) {}; | |
| 501 | |||
| 502 | /**. | ||
| 503 | * @brief Update finite element with element vertices coordinates and compute operators. | ||
| 504 | */ | ||
| 505 | ✗ | virtual void computeElementArrayBD(const std::vector<Point*>& /*elemPoint*/, const std::vector<felInt>& /*elemIdPoint*/, const std::vector<Point*>& /*elemNormal*/, const std::vector<std::vector<Point*> >& /*elemTangent*/, felInt& /*iel*/, FlagMatrixRHS /*flagMatrixRHS*/ = FlagMatrixRHS::matrix_and_rhs) {}; | |
| 506 | |||
| 507 | /**. | ||
| 508 | * @brief Compute user defined operators. | ||
| 509 | */ | ||
| 510 | 200236 | virtual void userElementComputeBD(const std::vector<Point*>& /*elemPoint*/, const std::vector<felInt>& /*elemIdPoint*/, felInt& /*iel*/) {}; | |
| 511 | |||
| 512 | /** | ||
| 513 | * @brief use elementary calculus to fill the global matrix. | ||
| 514 | */ | ||
| 515 | void setValueMatrixRHSBD(const std::vector<felInt>& ielSupportDof1, const std::vector<felInt>& ielSupportDof2, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs, bool buildMatT=false); | ||
| 516 | |||
| 517 | /** | ||
| 518 | * @brief use elementary calculus to fill the global matrix. | ||
| 519 | */ | ||
| 520 | void setValueMatrixRHSBD(const felInt ielSupportDof1, const felInt ielSupportDof2, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs, bool buildMatT=false); | ||
| 521 | |||
| 522 | /** | ||
| 523 | * @brief Place the m_elementMatrixBD[0] into a generic matrix. | ||
| 524 | */ | ||
| 525 | void setValueCustomMatrixBD(const std::vector<felInt>& ielSupportDof1, const std::vector<felInt>& ielSupportDof2, PetscMatrix& mat, bool buildMatT=false); | ||
| 526 | |||
| 527 | /** | ||
| 528 | * @brief Place the m_elementMatrixBD[0] into a generic matrix. | ||
| 529 | */ | ||
| 530 | void setValueCustomMatrixBD(const felInt ielSupportDof1, const felInt ielSupportDof2, PetscMatrix& mat, bool buildMatT=false); | ||
| 531 | |||
| 532 | /** | ||
| 533 | * @brief Place the m_elementVectorBD[0] into a generic vec. | ||
| 534 | */ | ||
| 535 | void setValueCustomVectorBD(const std::vector<felInt>& ielSupportDof1, InsertMode mode, PetscVector& vec) ; | ||
| 536 | |||
| 537 | /** | ||
| 538 | * @brief Place the m_elementVectorBD[0] into a generic vec. | ||
| 539 | */ | ||
| 540 | void setValueCustomVectorBD(const felInt ielSupportDof1, InsertMode mode, PetscVector& vec ); | ||
| 541 | |||
| 542 | /** | ||
| 543 | * @brief Allocate memory for assemble matrix and rhs. | ||
| 544 | */ | ||
| 545 | void allocateArrayForAssembleMatrixRHSBD(FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs); | ||
| 546 | |||
| 547 | /** | ||
| 548 | * @brief elementary loop to build matrix for "mixed" domain (volumes+surfaces or surfaces+edges). | ||
| 549 | * This function is used when the 3D (resp. 2D) domain has some surfaces (resp. edges) that are not boundaries of any volume (resp. surface), see for instance atria+ventricles. | ||
| 550 | * This function uses specific functions which are defined in derived problem classes. | ||
| 551 | */ | ||
| 552 | void assembleMatrixRHSCurrentAndCurvilinearElement(int rank, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs); | ||
| 553 | |||
| 554 | /** | ||
| 555 | * @brief This a quite general function to have a general assembly loop on the boundary. | ||
| 556 | */ | ||
| 557 | template<class theClass> | ||
| 558 | void assemblyLoopBoundaryGeneral( void (theClass::*functionOfTheLoop)( felInt ), | ||
| 559 | const std::vector<felInt> & labels, void (theClass::*initPerElementType)(), | ||
| 560 | void (theClass::*updateFunction)(const std::vector<Point*>&,const std::vector<int>&)); | ||
| 561 | |||
| 562 | |||
| 563 | // Assemble Boundary Conditions | ||
| 564 | //============================= | ||
| 565 | |||
| 566 | /*! | ||
| 567 | * \brief Apply boundary counditions | ||
| 568 | * | ||
| 569 | * \param[in] doPrintBC If true (and verbose > 2) print informations about boundary conditions. | ||
| 570 | * Rationale: in a Newton-Raphson method, we do not want to print these informations for each iteration. | ||
| 571 | * \param[in] do_apply_natural ApplyNaturalBoundaryConditions::yes in most cases. | ||
| 572 | * Rationale: in Newmark time scheme, we do not want to apply thee ones in the time iterations. | ||
| 573 | * | ||
| 574 | */ | ||
| 575 | void applyBC(const int & applicationOption, int rank, FlagMatrixRHS flagMatrixRHSEss = FlagMatrixRHS::matrix_and_rhs, FlagMatrixRHS flagMatrixRHSNat = FlagMatrixRHS::matrix_and_rhs, const int idBCforLinCombMethod=0, | ||
| 576 | bool doPrintBC = true, ApplyNaturalBoundaryConditionsType do_apply_natural = ApplyNaturalBoundaryConditions::yes); | ||
| 577 | |||
| 578 | /** | ||
| 579 | * @brief Assembly loop for boundary conditions on boundary element with curvilinear finite element. | ||
| 580 | */ | ||
| 581 | void assembleMatrixRHSNaturalBoundaryCondition(int rank, FlagMatrixRHS flagMatrixRHS=FlagMatrixRHS::matrix_and_rhs, const int idBCforLinCombMethod=0); | ||
| 582 | |||
| 583 | /** | ||
| 584 | * @brief Allocate vector boundary condition for derived problems | ||
| 585 | */ | ||
| 586 | 6104 | virtual void allocateVectorBoundaryConditionDerivedLinPb() {}; | |
| 587 | |||
| 588 | /** | ||
| 589 | * @brief Initialize the element fields | ||
| 590 | */ | ||
| 591 | 728 | virtual void initPerElementTypeBoundaryCondition(ElementType& /*eltType*/, FlagMatrixRHS /*flagMatrixRHS*/) {}; | |
| 592 | |||
| 593 | /** | ||
| 594 | * @brief Use by user to add some terms | ||
| 595 | */ | ||
| 596 | 5420 | virtual void userElementInitNaturalBoundaryCondition() {}; | |
| 597 | |||
| 598 | /** | ||
| 599 | * @brief Allocate vector m_elemFieldRobin, m_elemFieldRobinNormal, m_elemFieldNeumann, m_elemFieldNeumannNormal, m_elemFieldBackflowStab. | ||
| 600 | */ | ||
| 601 | void allocateElemFieldBoundaryCondition(const int idBCforLinCombMethod = 0); | ||
| 602 | |||
| 603 | /** | ||
| 604 | * @brief Overwrite value of m_elemFieldRobin, m_elemFieldRobinNormal, m_elemFieldNeumann and m_elemFieldNeumannNormal in derived linear problem. | ||
| 605 | */ | ||
| 606 | 3016 | virtual void allocateElemFieldBoundaryConditionDerivedLinPb(const int /*idBCforLinCombMethod*/) {}; | |
| 607 | |||
| 608 | /** | ||
| 609 | * @brief Initiallize some paramater associate to a mesh region. | ||
| 610 | */ | ||
| 611 | 5736 | virtual void initPerDomainBoundaryCondition(std::vector<Point*>& /*elemPoint*/, const std::vector<felInt>& /*elemIdPoint*/, int label, felInt /*numEltPerLabel*/, felInt* /*ielSupportDof*/, ElementType& /*eltType*/, felInt /*numElement_eltType*/, FlagMatrixRHS /*flagMatrixRHS*/ = FlagMatrixRHS::matrix_and_rhs) { m_currentLabel = label; }; | |
| 612 | |||
| 613 | /** | ||
| 614 | * @brief Update finite element with element vertices coordinates and compute operators (for curvilinear finite element). | ||
| 615 | */ | ||
| 616 | virtual void computeElementArrayBoundaryCondition(const std::vector<Point*>& elemPoint, const std::vector<felInt>& elemIdPoint,felInt& iel, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs); | ||
| 617 | |||
| 618 | /** | ||
| 619 | * @brief Compute user defined boundary conditions. | ||
| 620 | */ | ||
| 621 | 345554 | virtual void userElementComputeNaturalBoundaryCondition(const std::vector<Point*>& /*elemPoint*/, const std::vector<felInt>& /*elemIdPoint*/, felInt& /*iel*/, int /*label*/) {}; | |
| 622 | |||
| 623 | /** | ||
| 624 | * @brief Compute user defined boundary conditions. | ||
| 625 | */ | ||
| 626 | ✗ | virtual void userElementComputeNaturalBoundaryCondition(const std::vector<Point*>& /*elemPoint*/, const std::vector<felInt>& /*elemIdPoint*/, felInt& /*ielSupportDof1*/, felInt& /*ielSupportDof2*/, felInt& /*ielGeoGlobal*/, int /*label*/) {}; | |
| 627 | |||
| 628 | /** | ||
| 629 | * @brief Apply boundary condition of type: Neumann, NeumannNormal | ||
| 630 | */ | ||
| 631 | void applyNaturalBoundaryCondition(const std::vector<Point*>& elemPoint, const std::vector<felInt>& elemIdPoint, felInt& iel, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::only_rhs); | ||
| 632 | |||
| 633 | /** | ||
| 634 | * @brief Compute and apply boundary conditions | ||
| 635 | */ | ||
| 636 | virtual void computeAndApplyElementNaturalBoundaryCondition(const std::vector<Point*>& elemPoint, const std::vector<felInt>& elemIdPoint, felInt& ielSupportDof1, felInt& ielSupportDof2, felInt& ielGeoGlobal, FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs); | ||
| 637 | |||
| 638 | /**. | ||
| 639 | * @brief Compute operators for surface model | ||
| 640 | */ | ||
| 641 | ✗ | virtual void computeElementArraySurfaceModel(const std::vector<Point*>& /*elemPoint*/, const std::vector<felInt>& /*elemIdPoint*/, felInt& /*iel*/, FlagMatrixRHS /*flagMatrixRHS*/ = FlagMatrixRHS::matrix_and_rhs) {}; | |
| 642 | |||
| 643 | /**. | ||
| 644 | * @brief Essential boundary condition : Dirichlet, Essential LumpedModelBC | ||
| 645 | */ | ||
| 646 | void applyEssentialBoundaryCondition(int applicationOption, int rank, FlagMatrixRHS flagMatrixRHS); | ||
| 647 | |||
| 648 | /**. | ||
| 649 | * @brief Essential boundary condition derived problem | ||
| 650 | */ | ||
| 651 | 23353 | virtual void applyEssentialBoundaryConditionDerivedProblem(int /*rank*/, FlagMatrixRHS /*flagMatrixRHS*/) {}; | |
| 652 | |||
| 653 | /** | ||
| 654 | * @brief Define boundary condition and allocate element fields | ||
| 655 | */ | ||
| 656 | virtual void defineBC(); | ||
| 657 | |||
| 658 | /** | ||
| 659 | * @brief determine the dof for each essential boundary condition | ||
| 660 | */ | ||
| 661 | void determineDofAssociateToLabel(); | ||
| 662 | |||
| 663 | /** | ||
| 664 | * @brief Initialize the array idEltAndIdSupport for the boundary condition BC. | ||
| 665 | * @param[in] BC The boundary condition | ||
| 666 | */ | ||
| 667 | void determineElementSuppDofAssociateToBC(BoundaryCondition* BC); | ||
| 668 | |||
| 669 | /** | ||
| 670 | * @brief Set the value of the constant BC (in time AND space) | ||
| 671 | */ | ||
| 672 | void finalizeEssBCConstantInT(); | ||
| 673 | |||
| 674 | /** | ||
| 675 | * @brief Set the value of the constant BC in users (in time AND space) | ||
| 676 | */ | ||
| 677 | 664 | virtual void userFinalizeEssBCConstantInT() {}; | |
| 678 | |||
| 679 | /** | ||
| 680 | * @brief Call the functions for the essential BC | ||
| 681 | */ | ||
| 682 | void finalizeEssBCTransient(); | ||
| 683 | |||
| 684 | /** | ||
| 685 | * @brief Call the derived problem functions for the essential BC | ||
| 686 | */ | ||
| 687 | 27280 | virtual void finalizeEssBCTransientDerivedProblem() {}; | |
| 688 | |||
| 689 | /** | ||
| 690 | * @brief Call the user functions for the essential BC | ||
| 691 | */ | ||
| 692 | 23292 | virtual void userFinalizeEssBCTransient() {}; | |
| 693 | |||
| 694 | /** | ||
| 695 | * @brief ??? | ||
| 696 | */ | ||
| 697 | void getListDofOfBC(const BoundaryCondition& BC, std::unordered_set<felInt>& idDofBC, std::unordered_map<int, double>& idBCAndValue); | ||
| 698 | |||
| 699 | /** | ||
| 700 | * @brief ??? | ||
| 701 | */ | ||
| 702 | void getRings(); | ||
| 703 | |||
| 704 | /** | ||
| 705 | * @brief ??? | ||
| 706 | */ | ||
| 707 | virtual void userGetBC(BoundaryCondition* &BCIn,BoundaryCondition* &BCOut, BoundaryCondition* &BCLat); | ||
| 708 | |||
| 709 | /** | ||
| 710 | * @brief ??? | ||
| 711 | */ | ||
| 712 | void getListDofOfSurfaceByBc(const BoundaryCondition& BC, std::set<felInt>& idDofBC, int rankProc ); | ||
| 713 | |||
| 714 | /** | ||
| 715 | * @brief ??? | ||
| 716 | */ | ||
| 717 | ✗ | virtual double userComputeValueNeumannNormalTransient(const int /*iNeumannNormalBC*/) { return 0; }; | |
| 718 | |||
| 719 | /** | ||
| 720 | * @brief ??? | ||
| 721 | */ | ||
| 722 | void setValueBoundaryCondition(BoundaryCondition* bc, PetscVector& vecOfValue); | ||
| 723 | |||
| 724 | /** | ||
| 725 | * @brief ??? | ||
| 726 | */ | ||
| 727 | ✗ | virtual void defineRobinBCVector(PetscVector& /*robinVec*/, const int /*iRobin*/) {}; | |
| 728 | |||
| 729 | |||
| 730 | |||
| 731 | //Solve linear system | ||
| 732 | //=================== | ||
| 733 | |||
| 734 | /*! | ||
| 735 | * \brief Post assemble operations. | ||
| 736 | * | ||
| 737 | * Performs some operations after assembling is done. For instance, in dynamic systems the assembled matrices | ||
| 738 | * are not necessarily those of the system, but rather intermediate ones required to build the matrices of the system. | ||
| 739 | * For instance, in dynamic elasticity a new stiffness matrix is assembled and the matrix and RHS of the | ||
| 740 | * system are created from this one and others stored elsewhere. | ||
| 741 | * | ||
| 742 | * \internal I know Model class provides a postAssemblingMatrixRHS() method. However, it is not enough in the | ||
| 743 | * case of hyperelasticity: as Petsc's SNES is in charge of the Newton Raphson's loop, I must respect its interface | ||
| 744 | * and assembling is done at Petsc's call of the function given to SNESSetFunction(). | ||
| 745 | * I deliberately chose a very different method name to avoid any ambiguity. | ||
| 746 | */ | ||
| 747 | 17159 | virtual void computeSystemAfterAssembling() {}; | |
| 748 | |||
| 749 | /*! | ||
| 750 | * \brief Pre assemble operations for iterative solve. | ||
| 751 | * | ||
| 752 | * Perform some operations before assembling the matrices (for instance clearing them out.) | ||
| 753 | * | ||
| 754 | * \internal I know Model class provides a preAssemblingMatrixRHS() method. However, it is not enough in the | ||
| 755 | * case of hyperelasticity: as Petsc's SNES is in charge of the Newton Raphson's loop, I must respect its interface | ||
| 756 | * and assembling is done at Petsc's call of the function given to SNESSetFunction(). | ||
| 757 | * I deliberately chose a very different method name to avoid any ambiguity. | ||
| 758 | */ | ||
| 759 | void preSNESAssemble(); | ||
| 760 | |||
| 761 | /*! | ||
| 762 | * \brief Additional operations for preSNESAssemble() specific to derived problem. | ||
| 763 | */ | ||
| 764 | 12107 | virtual void preSNESAssembleAdditional() {}; | |
| 765 | |||
| 766 | /** | ||
| 767 | * @brief solve the linear solver with Petsc methods. | ||
| 768 | */ | ||
| 769 | void buildSolver(); | ||
| 770 | |||
| 771 | /** | ||
| 772 | * @brief Solve a ksp linear problem. | ||
| 773 | */ | ||
| 774 | void solve(int rank, int size, bool new_matrix = true); | ||
| 775 | |||
| 776 | /** | ||
| 777 | * @brief Solve with ksp a system with the same matrix as in the previous solve | ||
| 778 | */ | ||
| 779 | void solveWithSameMatrix(); | ||
| 780 | |||
| 781 | /*! | ||
| 782 | * \brief Solve a snes linear system. | ||
| 783 | * | ||
| 784 | * A SNES linear system is an iterative system that uses Petsc's Newton-Raphson method. | ||
| 785 | * | ||
| 786 | * \param[in] do_apply_natural Whether natural boundaries conditions are applied. | ||
| 787 | * ApplyNaturalBoundaryConditions::yes in most cases, but might be no for instance in dynamic systems where | ||
| 788 | * these conditions appear explicitly only on the very first iteration. | ||
| 789 | * \param[in] flag_matrix_rhs Specify on which element the assembling is done. | ||
| 790 | */ | ||
| 791 | void iterativeSolve(int rank, int size, ApplyNaturalBoundaryConditionsType do_apply_natural = ApplyNaturalBoundaryConditions::yes, FlagMatrixRHS flag_matrix_rhs = FlagMatrixRHS::matrix_and_rhs); | ||
| 792 | |||
| 793 | /** | ||
| 794 | * @brief Initializes the solver before the non-linear solve. | ||
| 795 | */ | ||
| 796 | 17471 | virtual void initNonLinearIteration() {}; | |
| 797 | |||
| 798 | /** | ||
| 799 | * @brief Finalizes the solver before the non-linear solve. | ||
| 800 | */ | ||
| 801 | 11680 | virtual void endNonLinearIteration() {}; | |
| 802 | |||
| 803 | /** | ||
| 804 | * @brief Initializes the solver for the current time step | ||
| 805 | */ | ||
| 806 | 5571 | virtual void initIteration() {}; | |
| 807 | |||
| 808 | /** | ||
| 809 | * @brief Finalizes the solver for the current time step | ||
| 810 | */ | ||
| 811 | 4205 | virtual void endIteration() {}; | |
| 812 | |||
| 813 | /** | ||
| 814 | * @brief Create and copy matrix and rhs withou boundary conditions | ||
| 815 | */ | ||
| 816 | void createAndCopyMatrixRHSWithoutBC(FlagMatrixRHS flag = FlagMatrixRHS::matrix_and_rhs); | ||
| 817 | |||
| 818 | /** | ||
| 819 | * @brief Compute the residual | ||
| 820 | */ | ||
| 821 | void computeResidual(); | ||
| 822 | |||
| 823 | |||
| 824 | |||
| 825 | //Vector and Matrix operators | ||
| 826 | //=========================== | ||
| 827 | |||
| 828 | /** | ||
| 829 | * @brief Add matrix and rhs | ||
| 830 | */ | ||
| 831 | 140 | virtual inline void addMatrixRHS() { matrix(0).axpy(1,matrix(1),SAME_NONZERO_PATTERN); } | |
| 832 | |||
| 833 | /** | ||
| 834 | * @brief Scales the LHS matrix by a constant. | ||
| 835 | */ | ||
| 836 | ✗ | virtual void addScaleMatrix(double /*coef*/ = 1.0) {}; | |
| 837 | |||
| 838 | /** | ||
| 839 | * @brief Scales the RHS vector by a constant. | ||
| 840 | */ | ||
| 841 | ✗ | virtual void addScaleRHS(double /*coef*/ = 1.0) {}; | |
| 842 | |||
| 843 | ✗ | virtual inline void copyMatrixRHS() {}; | |
| 844 | |||
| 845 | ✗ | virtual inline void inverseMatrix() {}; | |
| 846 | |||
| 847 | ✗ | virtual inline void solveExplicit() {}; | |
| 848 | |||
| 849 | /*! | ||
| 850 | * \brief Clear Matrix and/or RHS | ||
| 851 | * | ||
| 852 | * \param[in] flagMatrixRHS If 0, clear both matrix and RHS. If 1, only matrix, if 2, only RHS | ||
| 853 | */ | ||
| 854 | void clearMatrixRHS(const FlagMatrixRHS flagMatrixRHS = FlagMatrixRHS::matrix_and_rhs); | ||
| 855 | |||
| 856 | /*! | ||
| 857 | * \brief Clear the ith matrix. | ||
| 858 | * \param[in] i Matrix index | ||
| 859 | */ | ||
| 860 | void clearMatrix(std::size_t i = 0); | ||
| 861 | |||
| 862 | /*! | ||
| 863 | * \brief Clear the ith std::vector. | ||
| 864 | * \param[in] i Vector index | ||
| 865 | */ | ||
| 866 | void clearVector(std::size_t i = 0); | ||
| 867 | |||
| 868 | /** | ||
| 869 | * @brief This method provides the solution vector | ||
| 870 | */ | ||
| 871 | 24561 | inline void gatherSolution() { gatherVec(m_sol, m_seqSol); } | |
| 872 | |||
| 873 | /** | ||
| 874 | * @brief This method provides the NL iteration evaluation state vector | ||
| 875 | */ | ||
| 876 | 21834 | inline void gatherEvaluationState() { gatherVec(m_evaluationState, m_seqEvaluationState); }; | |
| 877 | |||
| 878 | // We should stop using this function and prefer directly gatherVec (petscVector.hpp, petscVector_friend.hpp). | ||
| 879 | // This function is left to avoid compatibility issues. | ||
| 880 | 50684 | inline void gatherVector(PetscVector& v, PetscVector& seqV) { gatherVec(v,seqV); } // TODO remove | |
| 881 | |||
| 882 | 260 | virtual void gatherVectorBeforeAssembleMatrixRHS() {}; | |
| 883 | |||
| 884 | void getSolution(double* & solution, int sizeProc, int numProc); | ||
| 885 | |||
| 886 | void setSolution(double* solution, int sizeProc, int numProc); | ||
| 887 | |||
| 888 | void getSolutionUnknown(PhysicalVariable unknown, PetscVector& v); | ||
| 889 | |||
| 890 | void getVector(double* & value, PetscVector& seqVec, int sizeProc, int numProc); | ||
| 891 | |||
| 892 | /** | ||
| 893 | * @brief This method gets the coodinate of support dof associate to the dof. | ||
| 894 | */ | ||
| 895 | void findCoordinateWithIdDof(felInt i, Point& pt); | ||
| 896 | |||
| 897 | /*! | ||
| 898 | * \brief Evaluates function f(x,y,z) on dof | ||
| 899 | * \param[in] func Functor to compute the values | ||
| 900 | * \param[in] array Array of values | ||
| 901 | */ | ||
| 902 | template <class Templ_functor> | ||
| 903 | void evalFunctionOnDof(const Templ_functor& func, std::vector<double>& array); // TODO is linearProblem a good place for this function? | ||
| 904 | |||
| 905 | /*! | ||
| 906 | * \brief Evaluates function f(x,y,z) on dof | ||
| 907 | * \param[in] func Functor to compute the values | ||
| 908 | * \param[in] array Array of values | ||
| 909 | * \param[in] extraData Extra data | ||
| 910 | */ | ||
| 911 | template <class Templ_functor> | ||
| 912 | void evalFunctionOnDof(const Templ_functor& func, std::vector<double>& array, std::vector<double>& extraData); // TODO is linearProblem a good place for this function? | ||
| 913 | |||
| 914 | /*! | ||
| 915 | * \brief Evaluates function f(x,y,z) on dof | ||
| 916 | * \param[in] func Functor to compute the values | ||
| 917 | * \param[in] array Array of values | ||
| 918 | * \param[in] extraData Extra data | ||
| 919 | */ | ||
| 920 | template <class Templ_functor> | ||
| 921 | void evalFunctionOnDof(const Templ_functor& func, std::vector<int>& array, std::vector<double>& extraData); // TODO is linearProblem a good place for this function? | ||
| 922 | |||
| 923 | /*! | ||
| 924 | * \brief Evaluates function f(x,y,z,t) on dof | ||
| 925 | * \param[in] func Functor to compute the values | ||
| 926 | * \param[in] time Time | ||
| 927 | * \param[in] array Array of values | ||
| 928 | */ | ||
| 929 | template <class Templ_functor> | ||
| 930 | void evalFunctionOnDof(const Templ_functor& func,double time, std::vector<double>& array); // TODO is linearProblem a good place for this function? | ||
| 931 | |||
| 932 | /*! | ||
| 933 | * \brief Evaluates function f(x,y,z,t) on dof | ||
| 934 | * \param[in] func Functor to compute the values | ||
| 935 | * \param[in] array Array of values | ||
| 936 | * \param[in] extraData Extra data | ||
| 937 | * \param[in] time Time | ||
| 938 | */ | ||
| 939 | template <class Templ_functor> | ||
| 940 | void evalFunctionOnDof(const Templ_functor& func, std::vector<double>& array, std::vector<double>& extraData,double time); // TODO is linearProblem a good place for this function? | ||
| 941 | |||
| 942 | /*! | ||
| 943 | * \brief Evaluates function f(x,y,z,t) on dof | ||
| 944 | * \param[in] func Functor to compute the values | ||
| 945 | * \param[in] time Time | ||
| 946 | * \param[in] array Array of values | ||
| 947 | * \param[in] extraData Extra data | ||
| 948 | */ | ||
| 949 | template <class Templ_functor> | ||
| 950 | void evalFunctionOnDof(const Templ_functor& func, double time, std::vector<double>& array, std::vector<double>& extraData); // TODO is linearProblem a good place for this function? | ||
| 951 | |||
| 952 | /*! | ||
| 953 | * \brief Evaluates function f(x,y,z) on dof | ||
| 954 | * \param[in] func Functor to compute the values | ||
| 955 | * \param[in] iComp I-th component | ||
| 956 | * \param[in] array Array of values | ||
| 957 | */ | ||
| 958 | template <class Templ_functor> | ||
| 959 | void evalFunctionOnDof(const Templ_functor& func, int iComp, std::vector<double>& array); // TODO is linearProblem a good place for this function? | ||
| 960 | |||
| 961 | /*! | ||
| 962 | * \brief Evaluates function f(x,y,z) on dof | ||
| 963 | * \param[in] func Functor to compute the values | ||
| 964 | * \param[in] array Array of values | ||
| 965 | */ | ||
| 966 | template <class Templ_functor> | ||
| 967 | void evalFunctionWithCompOnDof(const Templ_functor& func, std::vector<double>& array); // TODO is linearProblem a good place for this function? | ||
| 968 | |||
| 969 | /*! | ||
| 970 | * \brief Set values in m_seqSol and m_sol | ||
| 971 | * \param[in] functorXYZ Functor to compute the values | ||
| 972 | * \param[in] iVariable Variable ID | ||
| 973 | * \param[in] iComponent Component ID | ||
| 974 | */ | ||
| 975 | template <class FunctorXYZ> | ||
| 976 | inline void set_U_0(const FunctorXYZ& functorXYZ, int iVariable, int iComponent); | ||
| 977 | |||
| 978 | /*! | ||
| 979 | * \brief Set values in m_seqSol and m_sol | ||
| 980 | * \param[in] functorXYZ Functor to compute the values | ||
| 981 | * \param[in] iVariable Variable ID | ||
| 982 | * \param[in] iComponent Component ID | ||
| 983 | */ | ||
| 984 | template <class FunctorXYZ> | ||
| 985 | inline void set_U_0_parallel(const FunctorXYZ& functorXYZ, int iUnknown, int iComponent); | ||
| 986 | |||
| 987 | |||
| 988 | |||
| 989 | // Methods for auxiliary vectors | ||
| 990 | //============================== | ||
| 991 | |||
| 992 | /** | ||
| 993 | * @brief Initialize vectors | ||
| 994 | */ | ||
| 995 | void initPetscVectors(); | ||
| 996 | |||
| 997 | |||
| 998 | |||
| 999 | // Virtual methods widely used in derived linear problems | ||
| 1000 | //======================================================= | ||
| 1001 | ✗ | virtual void updateExtrapol(PetscVector& /*V_1*/) {}; | |
| 1002 | |||
| 1003 | ✗ | virtual void initExtrapol(PetscVector& /*V_1*/) {}; | |
| 1004 | |||
| 1005 | ✗ | virtual void initializeTimeScheme(Bdf* /*bdf*/) {}; | |
| 1006 | |||
| 1007 | ✗ | virtual void readData(IO& /*io*/) {}; | |
| 1008 | |||
| 1009 | ✗ | virtual void readData(IO& /*io*/, double /*iteration*/) {}; | |
| 1010 | |||
| 1011 | ///@} | ||
| 1012 | ///@name Access | ||
| 1013 | ///@{ | ||
| 1014 | |||
| 1015 | /** | ||
| 1016 | * @brief Returns the dimension of the problem (constant version) | ||
| 1017 | */ | ||
| 1018 | 57439957 | inline int dimension() const { return m_dimesion; } | |
| 1019 | |||
| 1020 | /** | ||
| 1021 | * @brief Returns the verbosity level (constant version) | ||
| 1022 | */ | ||
| 1023 | 581694 | inline const int& verbosity() const { return m_verbosity; } | |
| 1024 | |||
| 1025 | /** | ||
| 1026 | * @brief Returns the list of variables (constant version) | ||
| 1027 | */ | ||
| 1028 | inline const ListVariable& listVariable() const { return m_listVariable; } | ||
| 1029 | |||
| 1030 | /** | ||
| 1031 | * @brief Returns the list of variables | ||
| 1032 | */ | ||
| 1033 | 177714 | inline ListVariable& listVariable() { return m_listVariable; } | |
| 1034 | |||
| 1035 | /** | ||
| 1036 | * @brief Returns the list of unknowns (constant version) | ||
| 1037 | */ | ||
| 1038 | inline const ListUnknown& listUnknown() const { return m_listUnknown; } | ||
| 1039 | |||
| 1040 | /** | ||
| 1041 | * @brief Returns the list of unknowns | ||
| 1042 | */ | ||
| 1043 | 63207 | inline ListUnknown& listUnknown() { return m_listUnknown; } | |
| 1044 | |||
| 1045 | /** | ||
| 1046 | * @brief Returns the i-th linear problem mesh (constant version) | ||
| 1047 | */ | ||
| 1048 | inline const GeometricMeshRegion::Pointer mesh(int id) const { return m_mesh[id]; } | ||
| 1049 | |||
| 1050 | /** | ||
| 1051 | * @brief Returns the i-th linear problem mesh | ||
| 1052 | */ | ||
| 1053 | 4 | inline GeometricMeshRegion::Pointer mesh(int id) { return m_mesh[id]; } | |
| 1054 | |||
| 1055 | /** | ||
| 1056 | * @brief Returns the m_currentMesh linear problem mesh (constant version) | ||
| 1057 | */ | ||
| 1058 | ✗ | inline const GeometricMeshRegion::Pointer mesh() const { return m_mesh[m_currentMesh]; } | |
| 1059 | |||
| 1060 | /** | ||
| 1061 | * @brief Returns the m_currentMesh linear problem mesh | ||
| 1062 | */ | ||
| 1063 | 69222 | inline GeometricMeshRegion::Pointer mesh() { return m_mesh[m_currentMesh]; } | |
| 1064 | |||
| 1065 | /** | ||
| 1066 | * @brief Returns the linear problem mesh vector (constant version) | ||
| 1067 | */ | ||
| 1068 | inline const std::vector<GeometricMeshRegion::Pointer> & listMesh() const { return m_mesh; } | ||
| 1069 | |||
| 1070 | /** | ||
| 1071 | * @brief Returns the linear problem mesh vector | ||
| 1072 | */ | ||
| 1073 | inline std::vector<GeometricMeshRegion::Pointer> & listMesh() { return m_mesh; } | ||
| 1074 | |||
| 1075 | /** | ||
| 1076 | * @brief Returns the linear problem local mesh (constant version) | ||
| 1077 | */ | ||
| 1078 | inline const GeometricMeshRegion::Pointer meshLocal(int id) const { return m_meshLocal[id]; } | ||
| 1079 | |||
| 1080 | /** | ||
| 1081 | * @brief Returns the linear problem local mesh | ||
| 1082 | */ | ||
| 1083 | 824 | inline GeometricMeshRegion::Pointer meshLocal(int id) { return m_meshLocal[id]; } | |
| 1084 | |||
| 1085 | /** | ||
| 1086 | * @brief Returns the m_currentMesh linear problem local mesh (constant version) | ||
| 1087 | */ | ||
| 1088 | inline const GeometricMeshRegion::Pointer meshLocal() const { return m_meshLocal[m_currentMesh]; } | ||
| 1089 | |||
| 1090 | /** | ||
| 1091 | * @brief Returns the m_currentMesh linear problem local mesh | ||
| 1092 | */ | ||
| 1093 | 1966 | inline GeometricMeshRegion::Pointer meshLocal() { return m_meshLocal[m_currentMesh]; } | |
| 1094 | |||
| 1095 | /** | ||
| 1096 | * @brief Returns the linear problem local mesh (constant version) | ||
| 1097 | */ | ||
| 1098 | inline const std::vector<GeometricMeshRegion::Pointer>& listMeshLocal() const { return m_meshLocal; } | ||
| 1099 | |||
| 1100 | /** | ||
| 1101 | * @brief Returns the linear problem local mesh | ||
| 1102 | */ | ||
| 1103 | inline std::vector<GeometricMeshRegion::Pointer>& listMeshLocal() { return m_meshLocal; } | ||
| 1104 | |||
| 1105 | /** | ||
| 1106 | * @brief Returns the DoF object associated to the unknown (constant version). | ||
| 1107 | */ | ||
| 1108 | inline const Dof& dof() const { return m_dof; } | ||
| 1109 | |||
| 1110 | /** | ||
| 1111 | * @brief Returns the DoF object associated to the unknown. | ||
| 1112 | */ | ||
| 1113 | 90715950 | inline Dof& dof() { return m_dof; } | |
| 1114 | |||
| 1115 | /** | ||
| 1116 | * @brief Returns the dof partition vector (constant version) | ||
| 1117 | */ | ||
| 1118 | inline const std::vector<int>& dofPartition() const { return m_dofPart; } | ||
| 1119 | |||
| 1120 | /** | ||
| 1121 | * @brief Returns the dof partition vector | ||
| 1122 | */ | ||
| 1123 | 8 | inline std::vector<int>& dofPartition(){ return m_dofPart; } | |
| 1124 | |||
| 1125 | /** | ||
| 1126 | * @brief It returns the number of dofs(constant version) | ||
| 1127 | */ | ||
| 1128 | inline const felInt& numDof() const { return m_numDof; } | ||
| 1129 | |||
| 1130 | /** | ||
| 1131 | * @brief It returns the number of dofs | ||
| 1132 | */ | ||
| 1133 | 113360 | inline felInt& numDof() { return m_numDof; } | |
| 1134 | |||
| 1135 | /** | ||
| 1136 | * @brief It returns the number of dofs (local-constant version). | ||
| 1137 | */ | ||
| 1138 | inline const felInt& numDofLocal() const { return m_numDofLocal; } | ||
| 1139 | |||
| 1140 | /** | ||
| 1141 | * @brief It returns the number of dofs (local). | ||
| 1142 | */ | ||
| 1143 | ✗ | inline felInt& numDofLocal() { return m_numDofLocal; } | |
| 1144 | |||
| 1145 | /** | ||
| 1146 | * @brief It returns the number of dofs associated to the unknown. (constant version) | ||
| 1147 | * \param[in] i The ID of the unknown | ||
| 1148 | */ | ||
| 1149 | inline const felInt& numDofPerUnknown(felInt i) const { return m_numDofUnknown[i]; } | ||
| 1150 | |||
| 1151 | /** | ||
| 1152 | * @brief It returns the number of dofs associated to the unknown. | ||
| 1153 | * \param[in] i The ID of the unknown | ||
| 1154 | */ | ||
| 1155 | ✗ | inline felInt& numDofPerUnknown(felInt i) { return m_numDofUnknown[i]; } | |
| 1156 | |||
| 1157 | /** | ||
| 1158 | * @brief It returns the number of dofs associated to the unknown. (constant version) | ||
| 1159 | * \param[in] i The ID of the unknown | ||
| 1160 | */ | ||
| 1161 | inline felInt numDofPerUnknown(PhysicalVariable unknown) const { return m_numDofUnknown[m_listUnknown.getUnknownIdList(unknown)]; } | ||
| 1162 | |||
| 1163 | /** | ||
| 1164 | * @brief It returns the number of dofs associated to the unknown. | ||
| 1165 | * \param[in] i The ID of the unknown | ||
| 1166 | */ | ||
| 1167 | ✗ | inline felInt& numDofPerUnknown(PhysicalVariable unknown) { return m_numDofUnknown[m_listUnknown.getUnknownIdList(unknown)]; } | |
| 1168 | |||
| 1169 | /** | ||
| 1170 | * @brief It returns the local number of dofs associated to the unknown. (constant version) | ||
| 1171 | * \param[in] i The ID of the unknown | ||
| 1172 | */ | ||
| 1173 | inline felInt numDofLocalPerUnknown(PhysicalVariable unknown) const { return m_numDofLocalUnknown[m_listUnknown.getUnknownIdList(unknown)]; }; | ||
| 1174 | |||
| 1175 | /** | ||
| 1176 | * @brief It returns the local number of dofs associated to the unknown. (constant version) | ||
| 1177 | * \param[in] i The ID of the unknown | ||
| 1178 | */ | ||
| 1179 | 1164 | inline felInt& numDofLocalPerUnknown(PhysicalVariable unknown) { return m_numDofLocalUnknown[m_listUnknown.getUnknownIdList(unknown)]; }; | |
| 1180 | |||
| 1181 | /** | ||
| 1182 | * @brief Returns the vector of supportDof (constant version) | ||
| 1183 | */ | ||
| 1184 | inline const std::vector<SupportDofMesh>& supportDofUnknown() const { return m_supportDofUnknown; } | ||
| 1185 | |||
| 1186 | /** | ||
| 1187 | * @brief Returns the vector of supportDof | ||
| 1188 | */ | ||
| 1189 | ✗ | inline std::vector<SupportDofMesh>& supportDofUnknown() { return m_supportDofUnknown; } | |
| 1190 | |||
| 1191 | /** | ||
| 1192 | * @brief Returns the supportDof related to the given unknown (constant version) | ||
| 1193 | * \param[in] iunknown The ID of the unknown | ||
| 1194 | */ | ||
| 1195 | ✗ | inline const SupportDofMesh& supportDofUnknown(int iunknown) const { return m_supportDofUnknown[iunknown]; } | |
| 1196 | |||
| 1197 | /** | ||
| 1198 | * @brief Returns the supportDof related to the given unknown (constant version) | ||
| 1199 | * \param[in] iunknown The ID of the unknown | ||
| 1200 | */ | ||
| 1201 | 42893792 | inline SupportDofMesh& supportDofUnknown(int iunknown) { return m_supportDofUnknown[iunknown]; } | |
| 1202 | |||
| 1203 | /** | ||
| 1204 | * @brief Returns the vector of supportDofLocal (constant version) | ||
| 1205 | */ | ||
| 1206 | inline const std::vector<SupportDofMesh>& supportDofUnknownLocal() const { return m_supportDofUnknownLocal; } | ||
| 1207 | |||
| 1208 | /** | ||
| 1209 | * @brief Returns the vector of supportDofLocal | ||
| 1210 | */ | ||
| 1211 | inline std::vector<SupportDofMesh>& supportDofUnknownLocal() { return m_supportDofUnknownLocal; } | ||
| 1212 | |||
| 1213 | /** | ||
| 1214 | * @brief Returns the supportDofLocal related to the given unknown (constant version) | ||
| 1215 | * \param[in] iunknown The ID of the unknown | ||
| 1216 | */ | ||
| 1217 | inline const SupportDofMesh& supportDofUnknownLocal(int iunknown) const { return m_supportDofUnknownLocal[iunknown]; } | ||
| 1218 | |||
| 1219 | /** | ||
| 1220 | * @brief Returns the supportDofLocal related to the given unknown (constant version) | ||
| 1221 | * \param[in] iunknown The ID of the unknown | ||
| 1222 | */ | ||
| 1223 | inline SupportDofMesh& supportDofUnknownLocal(int iunknown) { return m_supportDofUnknownLocal[iunknown]; } | ||
| 1224 | |||
| 1225 | /** | ||
| 1226 | * @brief Returns the flag to know if m_ao is allocated (constant version) | ||
| 1227 | */ | ||
| 1228 | inline bool isAOAllocated() const { return m_initAO; } | ||
| 1229 | |||
| 1230 | /** | ||
| 1231 | * @brief Returns the flag to know if m_ao is allocated | ||
| 1232 | */ | ||
| 1233 | 11 | inline bool& isAOAllocated() { return m_initAO; } | |
| 1234 | |||
| 1235 | /** | ||
| 1236 | * @brief Returns the AO object (constant version) | ||
| 1237 | */ | ||
| 1238 | inline const AO& ao() const { return m_ao; } | ||
| 1239 | |||
| 1240 | /** | ||
| 1241 | * @brief Returns the AO object | ||
| 1242 | */ | ||
| 1243 | 350467 | inline AO& ao() { return m_ao; } | |
| 1244 | |||
| 1245 | /** | ||
| 1246 | * @brief Returns the flag to know if m_mappingNodes is allocated (constant version) | ||
| 1247 | */ | ||
| 1248 | inline bool isMappingNodesAllocated() const { return m_initMappingNodes; } | ||
| 1249 | |||
| 1250 | /** | ||
| 1251 | * @brief Returns the flag to know if m_mappingNodes is allocated | ||
| 1252 | */ | ||
| 1253 | 11 | inline bool& isMappingNodesAllocated() { return m_initMappingNodes; } | |
| 1254 | |||
| 1255 | /** | ||
| 1256 | * @brief Returns the local to global mapping of the dof (constant version) | ||
| 1257 | */ | ||
| 1258 | inline const ISLocalToGlobalMapping& mappingNodes() const { return m_mappingNodes; } | ||
| 1259 | |||
| 1260 | /** | ||
| 1261 | * @brief Returns the local to global mapping of the dof | ||
| 1262 | */ | ||
| 1263 | 11 | inline ISLocalToGlobalMapping& mappingNodes() { return m_mappingNodes; } | |
| 1264 | |||
| 1265 | /** | ||
| 1266 | * @brief Returns the flag to know if m_initMappingElem is allocated (constant version) | ||
| 1267 | */ | ||
| 1268 | inline bool isMappingElemAllocated() const { return m_initMappingElem; } | ||
| 1269 | |||
| 1270 | /** | ||
| 1271 | * @brief Returns the flag to know if m_initMappingElem is allocated | ||
| 1272 | */ | ||
| 1273 | 11 | inline bool& isMappingElemAllocated() { return m_initMappingElem; } | |
| 1274 | |||
| 1275 | /** | ||
| 1276 | * @brief Returns the local to global mapping of the elements (constant version) | ||
| 1277 | */ | ||
| 1278 | inline const ISLocalToGlobalMapping& mappingElem() const { return m_mappingElem[m_currentMesh]; } | ||
| 1279 | |||
| 1280 | /** | ||
| 1281 | * @brief Returns the local to global mapping of the elements | ||
| 1282 | */ | ||
| 1283 | 11 | inline ISLocalToGlobalMapping& mappingElem() { return m_mappingElem[m_currentMesh]; } | |
| 1284 | |||
| 1285 | /** | ||
| 1286 | * @brief Returns the local to global mapping of the elements (constant version) | ||
| 1287 | */ | ||
| 1288 | inline const ISLocalToGlobalMapping& mappingElem(int id) const { return m_mappingElem[id]; } | ||
| 1289 | |||
| 1290 | /** | ||
| 1291 | * @brief Returns the local to global mapping of the elements | ||
| 1292 | */ | ||
| 1293 | ✗ | inline ISLocalToGlobalMapping& mappingElem(int id) { return m_mappingElem[id]; } | |
| 1294 | |||
| 1295 | /** | ||
| 1296 | * @brief Returns the flag to know if m_initMappingElemSupport is allocated (constant version) | ||
| 1297 | */ | ||
| 1298 | inline bool isMappingElemSupportAllocated() const { return m_initMappingElemSupport; } | ||
| 1299 | |||
| 1300 | /** | ||
| 1301 | * @brief Returns the flag to know if m_initMappingElemSupport is allocated | ||
| 1302 | */ | ||
| 1303 | 11 | inline bool& isMappingElemSupportAllocated() { return m_initMappingElemSupport; } | |
| 1304 | |||
| 1305 | /** | ||
| 1306 | * @brief Returns the local to global mapping of the supportDof elements for the given unknown (constant version) | ||
| 1307 | * \param[in] iunknown The ID of the unknown | ||
| 1308 | */ | ||
| 1309 | inline const ISLocalToGlobalMapping* mappingElemSupportPerUnknown(int iUnknown) const { return m_mappingElemSupportPerUnknown[iUnknown]; } | ||
| 1310 | |||
| 1311 | /** | ||
| 1312 | * @brief Returns the local to global mapping of the supportDof elements for the given unknown | ||
| 1313 | * \param[in] iunknown The ID of the unknown | ||
| 1314 | */ | ||
| 1315 | 22 | inline ISLocalToGlobalMapping* mappingElemSupportPerUnknown(int iUnknown) { return m_mappingElemSupportPerUnknown[iUnknown]; } | |
| 1316 | |||
| 1317 | /** | ||
| 1318 | * @brief Returns the flag to know if m_initMappingLocalFelisceToGlobalPetsc is allocated (constant version) | ||
| 1319 | */ | ||
| 1320 | inline bool isMappingLocalFelisceToGlobalPetscAllocated() const { return m_initMappingLocalFelisceToGlobalPetsc; } | ||
| 1321 | |||
| 1322 | /** | ||
| 1323 | * @brief Returns the flag to know if m_initMappingLocalFelisceToGlobalPetsc is allocated | ||
| 1324 | */ | ||
| 1325 | 11 | inline bool& isMappingLocalFelisceToGlobalPetscAllocated() { return m_initMappingLocalFelisceToGlobalPetsc; } | |
| 1326 | |||
| 1327 | /** | ||
| 1328 | * @brief Returns the local id dof per unknown to the global id in PETSc ordering (constant version) | ||
| 1329 | * \param[in] iunknown The ID of the unknown | ||
| 1330 | */ | ||
| 1331 | inline const ISLocalToGlobalMapping& mappingIdFelisceToPetsc(int iUnknown) const { return m_mappingIdLocalDofPerUnknownToIdGlobalDofPetsc[iUnknown]; } | ||
| 1332 | |||
| 1333 | /** | ||
| 1334 | * @brief Returns the local id dof per unknown to the global id in PETSc ordering | ||
| 1335 | * \param[in] iunknown The ID of the unknown | ||
| 1336 | */ | ||
| 1337 | 22 | inline ISLocalToGlobalMapping& mappingIdFelisceToPetsc(int iUnknown) { return m_mappingIdLocalDofPerUnknownToIdGlobalDofPetsc[iUnknown]; } | |
| 1338 | |||
| 1339 | /** | ||
| 1340 | * @brief Returns the local id dof per unknown to the global id in PETSc ordering (constant version) | ||
| 1341 | * \param[in] iunknown The ID of the unknown | ||
| 1342 | */ | ||
| 1343 | inline const ISLocalToGlobalMapping& mappingDofLocalToDofGlobal(PhysicalVariable unknown) const { return m_mappingIdLocalDofPerUnknownToIdGlobalDofPetsc[m_listUnknown.getUnknownIdList(unknown)]; } | ||
| 1344 | |||
| 1345 | /** | ||
| 1346 | * @brief Returns the local id dof per unknown to the global id in PETSc ordering | ||
| 1347 | * \param[in] iunknown The ID of the unknown | ||
| 1348 | */ | ||
| 1349 | 1044 | inline ISLocalToGlobalMapping& mappingDofLocalToDofGlobal(PhysicalVariable unknown) { return m_mappingIdLocalDofPerUnknownToIdGlobalDofPetsc[m_listUnknown.getUnknownIdList(unknown)]; } | |
| 1350 | |||
| 1351 | /** | ||
| 1352 | * @brief Returns the flag to know if the system has been built (constant version) | ||
| 1353 | */ | ||
| 1354 | inline bool areSolutionAndRHSAllocated() const { return m_buildSystem; } // TODO change name | ||
| 1355 | |||
| 1356 | /** | ||
| 1357 | * @brief Returns the flag to know if the system has been built | ||
| 1358 | */ | ||
| 1359 | 11 | inline bool& areSolutionAndRHSAllocated() { return m_buildSystem; } // TODO change name | |
| 1360 | |||
| 1361 | /** | ||
| 1362 | * @brief Returns the number of matrices allocated | ||
| 1363 | */ | ||
| 1364 | 37218 | inline std::size_t numberOfMatrices() const { return m_matrices.size(); } | |
| 1365 | |||
| 1366 | /** | ||
| 1367 | * @brief Returns the vector of matrices | ||
| 1368 | */ | ||
| 1369 | inline std::vector<PetscMatrix> & matrices() { return m_matrices; } | ||
| 1370 | |||
| 1371 | /** | ||
| 1372 | * @brief Returns the i-th matrix (constant version) | ||
| 1373 | * \param[in] i Matrix index number | ||
| 1374 | */ | ||
| 1375 | inline PetscMatrix const& matrix(const std::size_t index = 0) const { return m_matrices[index]; } | ||
| 1376 | |||
| 1377 | /** | ||
| 1378 | * @brief Returns the i-th matrix | ||
| 1379 | * \param[in] i Matrix index number | ||
| 1380 | */ | ||
| 1381 | 103277 | inline PetscMatrix& matrix(const std::size_t index = 0) { return m_matrices[index]; } | |
| 1382 | |||
| 1383 | /** | ||
| 1384 | * @brief Returns the number of rhs allocated | ||
| 1385 | */ | ||
| 1386 | 22 | inline std::size_t numberOfVectors() const { return m_vectors.size(); } | |
| 1387 | |||
| 1388 | /** | ||
| 1389 | * @brief Returns the vector of rhs | ||
| 1390 | */ | ||
| 1391 | inline std::vector<PetscVector> & vectors() { return m_vectors; } | ||
| 1392 | |||
| 1393 | /** | ||
| 1394 | * @brief Returns the i-th rhs (constant version) | ||
| 1395 | * \param[in] i Rhs index number | ||
| 1396 | */ | ||
| 1397 | 41822 | inline const PetscVector& vector(const std::size_t index = 0) const { return m_vectors[index]; } | |
| 1398 | |||
| 1399 | /** | ||
| 1400 | * @brief Returns the i-th rhs | ||
| 1401 | * \param[in] i Rhs index number | ||
| 1402 | */ | ||
| 1403 | 1872353 | inline PetscVector& vector(const std::size_t index = 0) { return m_vectors[index]; } | |
| 1404 | |||
| 1405 | /** | ||
| 1406 | * @brief Returns the local solution (constant version) | ||
| 1407 | */ | ||
| 1408 | inline const PetscVector& solution() const { return m_sol; } | ||
| 1409 | |||
| 1410 | /** | ||
| 1411 | * @brief Returns the local solution | ||
| 1412 | */ | ||
| 1413 | 30272 | inline PetscVector& solution() { return m_sol; } | |
| 1414 | |||
| 1415 | /** | ||
| 1416 | * @brief Returns the flag to know if the sequential solution is allocated | ||
| 1417 | */ | ||
| 1418 | inline bool isSequentialSolutionAllocated() const { return m_seqSolAllocated; } | ||
| 1419 | |||
| 1420 | /** | ||
| 1421 | * @brief Returns the flag to know if the sequential solution is allocated | ||
| 1422 | */ | ||
| 1423 | 11 | inline bool& isSequentialSolutionAllocated() { return m_seqSolAllocated; } | |
| 1424 | |||
| 1425 | /** | ||
| 1426 | * @brief Returns the sequential solution (constant version) | ||
| 1427 | */ | ||
| 1428 | inline const PetscVector& sequentialSolution() const { return m_seqSol; } | ||
| 1429 | |||
| 1430 | /** | ||
| 1431 | * @brief Returns the sequential solution | ||
| 1432 | */ | ||
| 1433 | 14584400 | inline PetscVector & sequentialSolution() { return m_seqSol; } | |
| 1434 | |||
| 1435 | /** | ||
| 1436 | * @brief Returns the linear problem local mesh (constant version) | ||
| 1437 | */ | ||
| 1438 | inline std::size_t currentMesh() const { return m_currentMesh; } | ||
| 1439 | |||
| 1440 | /** | ||
| 1441 | * @brief Returns the linear problem local mesh | ||
| 1442 | */ | ||
| 1443 | 195480 | inline std::size_t& currentMesh() { return m_currentMesh; } | |
| 1444 | |||
| 1445 | /** | ||
| 1446 | * @brief Returns the list of boundary conditions (constant version) | ||
| 1447 | */ | ||
| 1448 | inline const BoundaryConditionList& getBoundaryConditionList() const { return m_boundaryConditionList; } | ||
| 1449 | |||
| 1450 | /** | ||
| 1451 | * @brief Returns the list of boundary conditions | ||
| 1452 | */ | ||
| 1453 | 1910 | inline BoundaryConditionList& getBoundaryConditionList() { return m_boundaryConditionList; } | |
| 1454 | |||
| 1455 | /** | ||
| 1456 | * @brief Returns the KSPInterface object | ||
| 1457 | */ | ||
| 1458 | 2220 | inline KSPInterface& kspInterface() { return *m_KSPInterface; } | |
| 1459 | |||
| 1460 | /** | ||
| 1461 | * @brief Returns the SNESInterface object | ||
| 1462 | */ | ||
| 1463 | 45149 | inline SNESInterface& snesInterface() {return *m_pSNESInterface;} | |
| 1464 | |||
| 1465 | /** | ||
| 1466 | * @brief Returns m_evaluationState (constant version) | ||
| 1467 | */ | ||
| 1468 | 20911 | inline const PetscVector& evaluationState() const { return m_evaluationState; } | |
| 1469 | |||
| 1470 | /** | ||
| 1471 | * @brief Returns m_evaluationState | ||
| 1472 | */ | ||
| 1473 | 341626 | inline PetscVector& evaluationState() { return m_evaluationState; } | |
| 1474 | |||
| 1475 | /** | ||
| 1476 | * @brief Returns m_seqEvaluationState (constant version) | ||
| 1477 | */ | ||
| 1478 | inline const PetscVector & seqEvaluationState() const { return m_seqEvaluationState; } | ||
| 1479 | |||
| 1480 | /** | ||
| 1481 | * @brief Returns m_seqEvaluationState | ||
| 1482 | */ | ||
| 1483 | 978769 | inline PetscVector & seqEvaluationState() { return m_seqEvaluationState; } | |
| 1484 | |||
| 1485 | /** | ||
| 1486 | * @brief Returns the linearized flag (constant version) | ||
| 1487 | */ | ||
| 1488 | inline bool linearizedFlag() const { return m_linearizedFlag; } | ||
| 1489 | |||
| 1490 | /** | ||
| 1491 | * @brief Returns the linearized flag | ||
| 1492 | */ | ||
| 1493 | 1968 | inline bool& linearizedFlag() { return m_linearizedFlag; } | |
| 1494 | |||
| 1495 | /** | ||
| 1496 | * @brief Returns the matrix without boundary condition | ||
| 1497 | */ | ||
| 1498 | ✗ | inline PetscMatrix& matrixWithoutBC() { return m_matrixWithoutBC; } | |
| 1499 | |||
| 1500 | /** | ||
| 1501 | * @brief Returns the rhs without boundary condition | ||
| 1502 | */ | ||
| 1503 | ✗ | inline PetscVector& rhsWithoutBC() { return m_rhsWithoutBC; } | |
| 1504 | |||
| 1505 | /** | ||
| 1506 | * @brief Returns the residual | ||
| 1507 | */ | ||
| 1508 | inline const PetscVector& residual() const { return m_residual; } | ||
| 1509 | |||
| 1510 | /** | ||
| 1511 | * @brief Returns the sequential residual | ||
| 1512 | */ | ||
| 1513 | ✗ | inline const PetscVector& seqResidual() const { return m_seqResidual; } | |
| 1514 | |||
| 1515 | /** | ||
| 1516 | * @brief Returns the static term flag (constant version) | ||
| 1517 | */ | ||
| 1518 | inline bool computeStaticTerm() const { return m_computeStaticTerm; } | ||
| 1519 | |||
| 1520 | /** | ||
| 1521 | * @brief Returns the static term flag | ||
| 1522 | */ | ||
| 1523 | 23604 | inline bool& computeStaticTerm() { return m_computeStaticTerm; } | |
| 1524 | |||
| 1525 | /** | ||
| 1526 | * @brief Returns the i-th extenal vector | ||
| 1527 | * \param[in] i External vector index | ||
| 1528 | */ | ||
| 1529 | 13010046 | inline PetscVector& externalVec(std::size_t i = 0) { return *m_externalVec[i]; } | |
| 1530 | |||
| 1531 | /** | ||
| 1532 | * @brief Returns the i-th extenal vector ordering | ||
| 1533 | * \param[in] i External vector index | ||
| 1534 | */ | ||
| 1535 | ✗ | inline AO& externalAO(std::size_t i = 0) { return m_externalAO[i]; } | |
| 1536 | |||
| 1537 | /** | ||
| 1538 | * @brief Push back external vector | ||
| 1539 | * \param[in] extVec The vector | ||
| 1540 | */ | ||
| 1541 |
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779 | inline void pushBackExternalVec(PetscVector& extVec) { m_externalVec.push_back(&extVec); } |
| 1542 | |||
| 1543 | /** | ||
| 1544 | * @brief Push back external AO object | ||
| 1545 | * \param[in] extAO The vector | ||
| 1546 | */ | ||
| 1547 | 62 | inline void pushBackExternalAO(AO extAO) { m_externalAO.push_back(extAO); } | |
| 1548 | |||
| 1549 | /** | ||
| 1550 | * @brief Push back external Dof object | ||
| 1551 | * \param[in] extDof The vector | ||
| 1552 | */ | ||
| 1553 |
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62 | inline void pushBackExternalDof(Dof& extDof) { m_externalDof.push_back(&extDof); } |
| 1554 | |||
| 1555 | /** | ||
| 1556 | * @brief Gather auxiliary vectors by name | ||
| 1557 | * \param[in] name The vector name | ||
| 1558 | */ | ||
| 1559 |
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|
18 | inline void gather(std::string name) { gatherVec( m_vecs.Get(name), m_seqVecs.Get(name)); } |
| 1560 | |||
| 1561 | /*! \brief Get an auxiliary vector by name | ||
| 1562 | * \param[in] type Sequential or parallel | ||
| 1563 | * \param[in] name String defining the name of the vector | ||
| 1564 | * \return the petscVector | ||
| 1565 | */ | ||
| 1566 | 1104 | inline PetscVector& get(vectorType type, std::string name) | |
| 1567 | { | ||
| 1568 |
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1104 | if ( type == sequential ) { if ( m_seqVecs.count(name) > 0 ) return m_seqVecs[name]; } |
| 1569 |
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52 | else if ( type == parallel ) { if ( m_vecs.count(name) > 0 ) return m_vecs[name]; } |
| 1570 | |||
| 1571 | ✗ | FEL_ERROR( "The std::vector " + name + " that you are looking for was not initialized." ); | |
| 1572 | ✗ | return m_vecs[name]; | |
| 1573 | } | ||
| 1574 | |||
| 1575 | /** | ||
| 1576 | * @brief CVGraphInterface (constant version) | ||
| 1577 | */ | ||
| 1578 | inline const CVGraphInterface::Pointer cvgraphInterf() const { return m_cvgraphInterf; } | ||
| 1579 | |||
| 1580 | /** | ||
| 1581 | * @brief CVGraphInterface | ||
| 1582 | */ | ||
| 1583 | ✗ | inline CVGraphInterface::Pointer cvgraphInterf() { return m_cvgraphInterf; } | |
| 1584 | |||
| 1585 | /** | ||
| 1586 | * @brief Returns the name of the linear problem | ||
| 1587 | */ | ||
| 1588 | ✗ | inline std::string name() const { return m_name; } | |
| 1589 | |||
| 1590 | /** | ||
| 1591 | * @brief Returns the pointer the to model owning this linear problem (constant version) | ||
| 1592 | */ | ||
| 1593 | inline Model* model() const { return mOwnerModel; } | ||
| 1594 | |||
| 1595 | /** | ||
| 1596 | * @brief Returns the pointer the to model owning this linear problem | ||
| 1597 | */ | ||
| 1598 | 42555 | inline Model*& model() { return mOwnerModel; } | |
| 1599 | |||
| 1600 | /** | ||
| 1601 | * @brief Returns the index if the parameter class attached to the model owning this linear problem (constant version) | ||
| 1602 | */ | ||
| 1603 | std::size_t instanceIndex() const; // { return mOwnerModel->instanceIndex(); } | ||
| 1604 | |||
| 1605 | /** | ||
| 1606 | * @brief Returns the index if the parameter class attached to the model owning this linear problem | ||
| 1607 | */ | ||
| 1608 | std::size_t& instanceIndex(); // { return mOwnerModel->instanceIndex(); } | ||
| 1609 | |||
| 1610 | /** | ||
| 1611 | * @brief Returns the ID of the linear problem(constant version) | ||
| 1612 | */ | ||
| 1613 | inline std::size_t identifierProblem() const { return m_identifier_problem; } | ||
| 1614 | |||
| 1615 | /** | ||
| 1616 | * @brief Returns the ID of the linear problem | ||
| 1617 | */ | ||
| 1618 | 513 | inline std::size_t& identifierProblem() { return m_identifier_problem; } | |
| 1619 | |||
| 1620 | ///@} | ||
| 1621 | ///@name Inquiry | ||
| 1622 | ///@{ | ||
| 1623 | |||
| 1624 | ///@} | ||
| 1625 | ///@name Input and output | ||
| 1626 | ///@{ | ||
| 1627 | |||
| 1628 | |||
| 1629 | //Write on files | ||
| 1630 | //============== | ||
| 1631 | |||
| 1632 | /// Print solution of the system solve. | ||
| 1633 | void printSolution(int verbose = 0, std::ostream& outstr = std::cout) const; // TODO move in a more suitable class | ||
| 1634 | |||
| 1635 | /// Write in file matrix.m, matrix in matlab format. | ||
| 1636 | void writeMatrixForMatlab(int verbose = 0, const std::string& filename = "matrix") const; // TODO move in a more suitable class | ||
| 1637 | |||
| 1638 | /// Write in file RHS.m, RHS in matlab format. | ||
| 1639 | void writeRHSForMatlab(int verbose = 0, const std::string& filename = "rhs") const; // TODO move in a more suitable class | ||
| 1640 | |||
| 1641 | // Write in file sol.m, solution in matlab format. | ||
| 1642 | void writeSolForMatlab(int verbose = 0, const std::string& filename = "solution") const; // TODO move in a more suitable class | ||
| 1643 | |||
| 1644 | /// Write in file filename, matrix in matlab format. | ||
| 1645 | void writeMatrixForMatlab(std::string const& fileName, PetscMatrix& matrix) const; // TODO move in a more suitable class | ||
| 1646 | |||
| 1647 | /// Write in file filenam, std::vector in matlab format. | ||
| 1648 | void writeVectorForMatlab(std::string const& fileName, PetscVector& vector) const; // TODO move in a more suitable class | ||
| 1649 | |||
| 1650 | /// Write in file matrix.mb, matrix in matlab format. | ||
| 1651 | void writeMatrixForMatlabBinary(int verbose = 0, const std::string& filename = "matrix") const; // TODO move in a more suitable class | ||
| 1652 | |||
| 1653 | /// Write in file RHS.mb, RHS in matlab format. | ||
| 1654 | void writeRHSForMatlabBinary(int verbose = 0, const std::string& filename = "rhs") const; // TODO move in a more suitable class | ||
| 1655 | |||
| 1656 | /// Write in file sol.mb, solution in matlab format. | ||
| 1657 | void writeSolForMatlabBinary(int verbose = 0, const std::string& filename = "solution") const; // TODO move in a more suitable class | ||
| 1658 | |||
| 1659 | /// Write in file filename, matrix in matlab format. | ||
| 1660 | void writeMatrixForMatlabBinary(std::string const& fileName, PetscMatrix& matrix) const; // TODO move in a more suitable class | ||
| 1661 | |||
| 1662 | /// Write in file filenam, std::vector in matlab format. | ||
| 1663 | void writeVectorForMatlabBinary(std::string const& fileName, PetscVector& vector) const; // TODO move in a more suitable class | ||
| 1664 | |||
| 1665 | /// Write solution from vector. | ||
| 1666 | void writeSolutionFromVec(PetscVector& v, int rank, std::vector<IO::Pointer>& io, double& time, int iteration, std::string prefix); // TODO move in a more suitable class | ||
| 1667 | |||
| 1668 | |||
| 1669 | //Write solution | ||
| 1670 | //============== | ||
| 1671 | |||
| 1672 | virtual void writeSolution(int rank, std::vector<IO::Pointer>& io, double& time, int iteration); | ||
| 1673 | |||
| 1674 | void writeSolutionBackup(const ListVariable& listVar, int rank, std::vector<IO::Pointer>& io, double& time, int iteration); | ||
| 1675 | |||
| 1676 | void fromVecToDoubleStar(double* solution, const PetscVector& sol, int rank, int dimension, felInt size=0); | ||
| 1677 | |||
| 1678 | void fromDoubleStarToVec(double* solution, PetscVector* sol, felInt size); | ||
| 1679 | |||
| 1680 | virtual void writeSupportVariableBackup(std::string name, double* supportVariable, int size, int dimension, int rank, IO::Pointer io, double& time, int iteration, bool manageMemory=false); | ||
| 1681 | |||
| 1682 | |||
| 1683 | //Write mesh to read solution with specific mesh (P2, Q2,...) | ||
| 1684 | //=========================================================== | ||
| 1685 | |||
| 1686 | void writeGeoForUnknown(int iUnknown, std::string nameOfGeoFile=""); | ||
| 1687 | |||
| 1688 | void writeGeoForUnknownEnsightGold(int iUnknown, std::map<felInt, std::vector<felInt> >& refToListOfIds, std::string nameOfGeoFile=""); | ||
| 1689 | |||
| 1690 | ///@} | ||
| 1691 | ///@name Operation that should be declared as friends function | ||
| 1692 | ///@{ | ||
| 1693 | |||
| 1694 | /// Remove average on solution. | ||
| 1695 | void removeAverageFromSolution(PhysicalVariable unknown, int rankProc); | ||
| 1696 | |||
| 1697 | /// Remove average on solution. Every processors do the same work at the moment (in progress). | ||
| 1698 | void removeAverageFromSolutionCurv(PhysicalVariable unknown, int rankProc); | ||
| 1699 | |||
| 1700 | void removeMaxSol(PhysicalVariable unknown, double valMax, int rankProc); | ||
| 1701 | |||
| 1702 | //Compute mean quantities or flux on a given label lists. | ||
| 1703 | // If PhysicalVariable has more than ncoor components -> compute Flux (typically for the velocity) | ||
| 1704 | // If PhysicalVariable is a scalar (num component = 1) -> compute Mean (typically for the Pressure) | ||
| 1705 | // --Version specific for the solution | ||
| 1706 | void computeMeanQuantity(PhysicalVariable unknown, const std::vector<int>& label, std::vector<double>& MeanQuantity); | ||
| 1707 | |||
| 1708 | //Compute mean quantities or flux on a given label lists. | ||
| 1709 | // If PhysicalVariable has more than ncoor components -> compute Flux (typically for the velocity) | ||
| 1710 | // If PhysicalVariable is a scalar (num component = 1) -> compute Mean (typically for the Pressure) | ||
| 1711 | // --Generic version for any petscVec | ||
| 1712 | void computeMeanQuantity(PetscVector& seqVec, PhysicalVariable unknown, const std::vector<int>& label, std::vector<double>& meanQuantity); | ||
| 1713 | |||
| 1714 | //Compute mean quantities or flux on a given label lists. | ||
| 1715 | // If PhysicalVariable has more than ncoor components -> compute Flux (typically for the velocity) | ||
| 1716 | // If PhysicalVariable is a scalar (num component = 1) -> compute Mean (typically for the Pressure) | ||
| 1717 | // --Generic version for any petscVec | ||
| 1718 | void computeMeanExternalQuantity(PetscVector& seqVec, AO externalAO, PhysicalVariable unknown, const std::vector<int>& label, std::vector<double>& meanQuantity); | ||
| 1719 | |||
| 1720 | //Compute mean quantities for each component on a given label lists. | ||
| 1721 | void computeMeanQuantityDomain(PhysicalVariable unknown, const std::vector<int>& label, std::vector<double>& MeanQuantity, std::vector<double>& measure); | ||
| 1722 | |||
| 1723 | //Compute the measure of a boundary part | ||
| 1724 | void computeMeasure(const std::vector<int>& label, std::vector<double>& measure); | ||
| 1725 | |||
| 1726 | //Compute the measure and the averaged normal of a boundary part | ||
| 1727 | void computeMeasureNormal(const std::vector<int>& label, std::vector<double>& measure, std::vector<double>& normal); | ||
| 1728 | |||
| 1729 | // Compute L2 error between present solution unknown (u or p) and the reference solution fctExactSolOnDof, where the latter | ||
| 1730 | // is analytically computed on dof or read from a file (in this case, please sure that numDof(unknown) = size of fctExactSolOnDof - Cuc 10/10/13) | ||
| 1731 | void errorL2(PhysicalVariable unknown, std::vector<double>& fctExactSolOnDof, double& resultL2Norm); | ||
| 1732 | |||
| 1733 | // Computing \int_\Omega u \dot u i.e. norm(u,2)^2 (unknown = u) - Gregory 25/09/12 | ||
| 1734 | void computel2NormSquared(PhysicalVariable unknown, int rankProc, double& l2NormSquared); | ||
| 1735 | |||
| 1736 | // Computing \int_\Omega \nabla u : \nabla u where u = unknown | ||
| 1737 | // It's semi-norm(u,H1)^2 - Gregory 25/09/12 | ||
| 1738 | void computeSemiNormH1Squared(PhysicalVariable unknown, int rankProc, double& semiNormH1Squared); | ||
| 1739 | |||
| 1740 | // Computing \int_\Gamma \rho*0.5 (u \dot u) (u \dot n) where u = unknown - Gregory 25/09/12 | ||
| 1741 | void computePowerBDu(PhysicalVariable unknown, int rankProc, const std::vector<int>& label, double density, std::vector<double>& PowerBDu); | ||
| 1742 | |||
| 1743 | // Computing \int_\Gamma (grad u \dot n) \cdot w, where u = unknown and w is given | ||
| 1744 | void computeConvBoundary(PhysicalVariable unknown, PetscVector& testFunction, int rankProc, const std::vector<int>& label, std::vector<double>& convBD); | ||
| 1745 | |||
| 1746 | /* Given two std::vector functions, u and w, compute \int_{Gamma} \grad_u \cdot n \cdot w */ | ||
| 1747 | double computeViscBoundary(int label, PetscVector& W); | ||
| 1748 | |||
| 1749 | // Computing \int_\Gamma p (u \dot n) - Gregory 25/09/12 | ||
| 1750 | // Typically unknow1 = p and unknow2 = u | ||
| 1751 | void computePowerBDpu(PhysicalVariable unknown1, PhysicalVariable unknown2, int rankProc, const std::vector<int>& label, std::vector<double>& PowerBDpu); | ||
| 1752 | |||
| 1753 | // Computing \int_\Omega u(n) \dot u(n-1) - Gregory 25/09/12 | ||
| 1754 | void computeProdUn_Un_1(PhysicalVariable unknown, int rankProc, Bdf& bdf, double& prodUn_Un_1); | ||
| 1755 | |||
| 1756 | // Computing \int_\Omega (u(n)-u(n-1))^2 - Gregory 25/09/12 | ||
| 1757 | void computeDiffSquaredUn_Un_1(PhysicalVariable unknown, int rankProc, Bdf& bdf, double& diffSquareUn_Un_1); | ||
| 1758 | |||
| 1759 | // Computing numerical Temam's trick : \int_\Omega div(u(n-1)) \dot u(n) v | ||
| 1760 | void computeTemamTerm(PhysicalVariable unknown, int rankProc, Bdf& bdf, double& temamTerm); | ||
| 1761 | |||
| 1762 | void computeBoundaryStress(int coeff, int label, std::vector<double>& stress); | ||
| 1763 | |||
| 1764 | void computeDomainIntegralOfDivergence(PhysicalVariable unknown, const std::vector<int>& label, std::vector<double>& integralOfDivergence); | ||
| 1765 | |||
| 1766 | ///@} | ||
| 1767 | protected: | ||
| 1768 | ///@name Protected static Member Variables | ||
| 1769 | ///@{ | ||
| 1770 | |||
| 1771 | ///@} | ||
| 1772 | ///@name Protected member Variables | ||
| 1773 | ///@{ | ||
| 1774 | |||
| 1775 | /// Spatial dimesion of the problem | ||
| 1776 | int m_dimesion = -1; | ||
| 1777 | |||
| 1778 | /// Verbosity level considered | ||
| 1779 | int m_verbosity = 0; | ||
| 1780 | |||
| 1781 | /// Object to manage time splitting | ||
| 1782 | FelisceTransient::Pointer m_fstransient = nullptr; | ||
| 1783 | |||
| 1784 | /// Object which contains variables of the linear system. | ||
| 1785 | ListVariable m_listVariable; | ||
| 1786 | |||
| 1787 | /// Object which contains unknown of the linear system. | ||
| 1788 | ListUnknown m_listUnknown; | ||
| 1789 | |||
| 1790 | ///@} | ||
| 1791 | ///@name Protected member Variables related to the meshes | ||
| 1792 | ///@{ | ||
| 1793 | |||
| 1794 | /// Set of meshes used by unknowns | ||
| 1795 | std::vector<std::size_t> m_meshUnknown; | ||
| 1796 | |||
| 1797 | /// Vector of input meshes defining the domains of work. | ||
| 1798 | std::vector<GeometricMeshRegion::Pointer> m_mesh; | ||
| 1799 | |||
| 1800 | /// Vector of the partitioned meshes | ||
| 1801 | std::vector<GeometricMeshRegion::Pointer> m_meshLocal; | ||
| 1802 | |||
| 1803 | ///@} | ||
| 1804 | ///@name Protected member Variables related to Dof, SupportDof and their partition | ||
| 1805 | ///@{ | ||
| 1806 | |||
| 1807 | /// Object which manage degrees of freedom | ||
| 1808 | Dof m_dof; | ||
| 1809 | |||
| 1810 | /// Array which contains degree of freedom repartition (size = numDof, value = rank of the processor which keep in memory the dof). | ||
| 1811 | std::vector<int> m_dofPart; // TODO if it is realted to the dof. why is it here and not in the dof class? | ||
| 1812 | |||
| 1813 | /// Array which contains element repartition (size = numDof, value = rank of the processor which keep in memory the element). //size = numElem.. | ||
| 1814 | std::vector<std::vector<int> > m_eltPart; // TODO if it is realted to the dof. why is it here and not in the dof class? | ||
| 1815 | |||
| 1816 | /// Number of dof in the problem | ||
| 1817 | felInt m_numDof = 0; | ||
| 1818 | |||
| 1819 | /// Number of dof contained by the current processor | ||
| 1820 | felInt m_numDofLocal = 0; | ||
| 1821 | |||
| 1822 | /// Number of dof for unknown | ||
| 1823 | std::vector<felInt> m_numDofUnknown; | ||
| 1824 | |||
| 1825 | /// Number of dof local for unknown | ||
| 1826 | std::vector<felInt> m_numDofLocalUnknown; | ||
| 1827 | |||
| 1828 | /// Global information about support of the degrees of freedom | ||
| 1829 | std::vector<SupportDofMesh> m_supportDofUnknown; | ||
| 1830 | |||
| 1831 | /// Boolean to know if m_supportDofUnknownOriginal is allocated | ||
| 1832 | bool m_areOriginalSupportDofMeshAllocated = false; | ||
| 1833 | |||
| 1834 | /// Global information about the original support of the degrees of freedom | ||
| 1835 | std::vector<SupportDofMesh*> m_supportDofUnknownOriginal; | ||
| 1836 | |||
| 1837 | /// Local information about support of the degrees of freedom | ||
| 1838 | std::vector<SupportDofMesh> m_supportDofUnknownLocal; | ||
| 1839 | |||
| 1840 | /// Boolean to know if m_ao is allocated | ||
| 1841 | bool m_initAO = false; | ||
| 1842 | |||
| 1843 | /// Mapping between global problem numbering and matrix dof numbering (specific to Petsc utilisation). | ||
| 1844 | AO m_ao; // TODO if it is realted to the dof why is here and not in the dof class? | ||
| 1845 | |||
| 1846 | /// Boolean to know if m_mappingNodes is allocated | ||
| 1847 | bool m_initMappingNodes = false; | ||
| 1848 | |||
| 1849 | /// Mapping between local to global ordering of support dof. | ||
| 1850 | ISLocalToGlobalMapping m_mappingNodes; // TODO do we really need it? // TODO if it is realted to the dof. why is it here and not in the dof class? | ||
| 1851 | |||
| 1852 | /// Boolean to know if m_mappingElem is allocated | ||
| 1853 | bool m_initMappingElem = false; | ||
| 1854 | |||
| 1855 | /// Mapping between local to global ordering of element. | ||
| 1856 | std::vector<ISLocalToGlobalMapping> m_mappingElem; // TODO if it is realted to the mesh. why is it here and not in the mesh class? | ||
| 1857 | |||
| 1858 | /// Boolean to know if m_mappingElemSupportPerUnknown is allocated | ||
| 1859 | bool m_initMappingElemSupport = false; | ||
| 1860 | |||
| 1861 | /// Mapping between local to global ordering of element support | ||
| 1862 | std::vector<ISLocalToGlobalMapping*> m_mappingElemSupportPerUnknown; // TODO if it is realted to the supportDof. why is it here and not in the supportDof class? | ||
| 1863 | |||
| 1864 | /// Boolean to know if m_mappingIdLocalDofPerUnknownToIdGlobalDofPetsc is allocated | ||
| 1865 | bool m_initMappingLocalFelisceToGlobalPetsc = false; | ||
| 1866 | |||
| 1867 | /// Mapping between local to global ordering of element. | ||
| 1868 | std::vector<ISLocalToGlobalMapping> m_mappingIdLocalDofPerUnknownToIdGlobalDofPetsc; // TODO do we really need it? | ||
| 1869 | |||
| 1870 | ///@} | ||
| 1871 | ///@name Protected member Variables used for the linear system | ||
| 1872 | ///@{ | ||
| 1873 | |||
| 1874 | /// Boolean to know if the system (m_matrices, m_vectors...) is allocated | ||
| 1875 | bool m_buildSystem = false; | ||
| 1876 | |||
| 1877 | /// Matrices used in formulation: the first one is the matrix used to compute the solution | ||
| 1878 | std::vector<PetscMatrix> m_matrices; | ||
| 1879 | |||
| 1880 | /// Rhs used in formulation: the first one is the rhs used to compute the solution | ||
| 1881 | std::vector<PetscVector> m_vectors; | ||
| 1882 | |||
| 1883 | /// Solution of the problem | ||
| 1884 | PetscVector m_sol; | ||
| 1885 | |||
| 1886 | /// Boolean to know if the sequential solution is allocated | ||
| 1887 | bool m_seqSolAllocated = false; | ||
| 1888 | |||
| 1889 | /// Sequential solution of the problem | ||
| 1890 | PetscVector m_seqSol; | ||
| 1891 | |||
| 1892 | ///@} | ||
| 1893 | ///@name Protected member Variables for assembling the matrix | ||
| 1894 | ///@{ | ||
| 1895 | |||
| 1896 | /// ID of the current mesh used for assembling | ||
| 1897 | std::size_t m_currentMesh = 0; | ||
| 1898 | |||
| 1899 | /// Label of the current element | ||
| 1900 | int m_currentLabel; | ||
| 1901 | |||
| 1902 | /// List of finite element in the problem. | ||
| 1903 | ListCurrentFiniteElement m_listCurrentFiniteElement; | ||
| 1904 | |||
| 1905 | /// List of curvilinear finite element in the problem. | ||
| 1906 | ListCurvilinearFiniteElement m_listCurvilinearFiniteElement; | ||
| 1907 | |||
| 1908 | /// List of finite element with Bd in the problem. | ||
| 1909 | ListCurrentFiniteElementWithBd m_listCurrentFiniteElementWithBd; | ||
| 1910 | |||
| 1911 | /// Element matrix | ||
| 1912 | std::vector<ElementMatrix::Pointer> m_elementMat; | ||
| 1913 | |||
| 1914 | /// Element matrix transpose | ||
| 1915 | std::vector<ElementMatrix::Pointer> m_elementMatT; | ||
| 1916 | |||
| 1917 | /// Element vector | ||
| 1918 | std::vector<ElementVector::Pointer> m_elementVector; | ||
| 1919 | |||
| 1920 | /// Element matrix boundary element | ||
| 1921 | std::vector<ElementMatrix::Pointer> m_elementMatBD; | ||
| 1922 | |||
| 1923 | /// Element matrix boundary element transpose | ||
| 1924 | std::vector<ElementMatrix::Pointer> m_elementMatTBD; | ||
| 1925 | |||
| 1926 | /// Element vector boundary element | ||
| 1927 | std::vector<ElementVector::Pointer> m_elementVectorBD; | ||
| 1928 | |||
| 1929 | /// Temporary array: mapping from local to global position of matrix/vector lines | ||
| 1930 | felInt* m_GposLine = nullptr; | ||
| 1931 | |||
| 1932 | /// Temporary array: mapping from local to global position of matrix columns | ||
| 1933 | felInt* m_GposColumn = nullptr; | ||
| 1934 | |||
| 1935 | ///@} | ||
| 1936 | ///@name Protected member Variables for assembling the boundary condition | ||
| 1937 | ///@{ | ||
| 1938 | |||
| 1939 | /* | ||
| 1940 | what if we use | ||
| 1941 | std::unordered_map<typeOfBC,std::vector<ElementField> > m_mapElemFieldBC | ||
| 1942 | such that m_mapElemFieldBC[ neumann ] ~ m_elemFieldNeumann? | ||
| 1943 | in this way the code would be more readable and we can loop over them and generalize functions that, | ||
| 1944 | for now are huge cut and paste. | ||
| 1945 | */ | ||
| 1946 | |||
| 1947 | /// Object which contains all objects boundaryCondition to define boundaries conditions of the problem. | ||
| 1948 | BoundaryConditionList m_boundaryConditionList; | ||
| 1949 | |||
| 1950 | /// Vector of elemField to apply Neumann boundary condition. | ||
| 1951 | std::vector<ElementField> m_elemFieldNeumann; | ||
| 1952 | |||
| 1953 | /// Vector of elemField to apply Neumann Normal boundary condition. | ||
| 1954 | std::vector<ElementField> m_elemFieldNeumannNormal; | ||
| 1955 | |||
| 1956 | /// Vector of elemField to apply Robin boundary condition. | ||
| 1957 | std::vector<ElementField> m_elemFieldRobin; | ||
| 1958 | |||
| 1959 | /// Vector of elemField to apply Robin Normal boundary condition. | ||
| 1960 | std::vector<ElementField> m_elemFieldRobinNormal; | ||
| 1961 | |||
| 1962 | /// Vector of elemField to apply EmbedFSI boundary condition. | ||
| 1963 | std::vector<ElementField> m_elemFieldEmbedFSI; | ||
| 1964 | |||
| 1965 | /// Vector of elemFieldNormal to apply EmbedFSI boundary condition. | ||
| 1966 | std::vector<ElementField> m_elemFieldNormalForEmbedFSI; | ||
| 1967 | |||
| 1968 | /// Vector of elemFieldAlpha to apply EmbedFSI boundary condition. | ||
| 1969 | std::vector<ElementField> m_elemFieldAlphaForEmbedFSI; | ||
| 1970 | |||
| 1971 | /// Vector of elemField to apply backflow stabilization boundary condition. | ||
| 1972 | std::vector<ElementField> m_elemFieldBackflowStab; | ||
| 1973 | |||
| 1974 | /// Boolean to know if m_idDofRings and m_idDofRingsSeq have been already computed | ||
| 1975 | bool m_ringsComputed = false; | ||
| 1976 | |||
| 1977 | /// Id of the dofs belonging to the rings | ||
| 1978 | std::unordered_set<int> m_idDofRings; | ||
| 1979 | |||
| 1980 | // Id of the dofs belonging to the rings seq vector | ||
| 1981 | std::unordered_set<int> m_idDofRingsSeq; | ||
| 1982 | |||
| 1983 | ///@} | ||
| 1984 | ///@name Protected member Variables for solving the system of equation | ||
| 1985 | ///@{ | ||
| 1986 | |||
| 1987 | /// Interface to PETSc linear solver (direct or iterative) | ||
| 1988 | KSPInterface::Pointer m_KSPInterface = felisce::make_shared<KSPInterface>(); | ||
| 1989 | |||
| 1990 | /// Interface to PETSc non linear solver (direct or iterative) | ||
| 1991 | SNESInterface::Pointer m_pSNESInterface = felisce::make_shared<SNESInterface>(); | ||
| 1992 | |||
| 1993 | /// Id of the solver if multiple solvers (default value = 0). | ||
| 1994 | int m_identifier_solver = 0; | ||
| 1995 | |||
| 1996 | /// Evaluation state of the residual of the problem (only useful in SNES method) | ||
| 1997 | PetscVector m_evaluationState; | ||
| 1998 | |||
| 1999 | /// Sequential evaluation state of the residual of the problem (only useful in SNES method) | ||
| 2000 | PetscVector m_seqEvaluationState; | ||
| 2001 | |||
| 2002 | /// Context for SNES solver | ||
| 2003 | SnesContext m_snesContext; | ||
| 2004 | |||
| 2005 | /// The flag that determines if the problem is linearized (used for FSI) | ||
| 2006 | bool m_linearizedFlag = false; | ||
| 2007 | |||
| 2008 | /// Matrix without boundary condition | ||
| 2009 | PetscMatrix m_matrixWithoutBC; | ||
| 2010 | |||
| 2011 | /// RHS without boundary condition | ||
| 2012 | PetscVector m_rhsWithoutBC; | ||
| 2013 | |||
| 2014 | /// Parallel residual | ||
| 2015 | PetscVector m_residual; | ||
| 2016 | |||
| 2017 | /// Sequential residual | ||
| 2018 | PetscVector m_seqResidual; | ||
| 2019 | |||
| 2020 | /// The flag that determines whether compute or not the static term | ||
| 2021 | bool m_computeStaticTerm = false; | ||
| 2022 | |||
| 2023 | ///@} | ||
| 2024 | ///@name Protected member Variables that point to external vectors (e.g. vectors defined in another linearProblem) | ||
| 2025 | ///@{ | ||
| 2026 | |||
| 2027 | /// Pointer to external vectors | ||
| 2028 | std::vector<PetscVector*> m_externalVec; | ||
| 2029 | |||
| 2030 | /// Pointer to external vectors ordering | ||
| 2031 | std::vector<AO> m_externalAO; | ||
| 2032 | |||
| 2033 | /// Pointer to external vectors of dof objects | ||
| 2034 | std::vector<Dof*> m_externalDof; | ||
| 2035 | |||
| 2036 | ///@} | ||
| 2037 | ///@name Protected member Variables auxiliary maps of petscVector | ||
| 2038 | ///@{ | ||
| 2039 | |||
| 2040 | /// Map of petscVector | ||
| 2041 | Tools::mapHolder<std::string,PetscVector> m_vecs; | ||
| 2042 | |||
| 2043 | /// Map of sequential petscVector | ||
| 2044 | Tools::mapHolder<std::string,PetscVector> m_seqVecs; | ||
| 2045 | |||
| 2046 | ///@} | ||
| 2047 | ///@name Protected member Variables CVGraphInterface | ||
| 2048 | ///@{ | ||
| 2049 | |||
| 2050 | /// CVGraphInterface | ||
| 2051 | CVGraphInterface::Pointer m_cvgraphInterf; | ||
| 2052 | |||
| 2053 | ///@} | ||
| 2054 | ///@name Protected Operators | ||
| 2055 | ///@{ | ||
| 2056 | |||
| 2057 | ///@} | ||
| 2058 | ///@name Protected Operations | ||
| 2059 | ///@{ | ||
| 2060 | |||
| 2061 | /** | ||
| 2062 | * \brief Set the number of matrixes | ||
| 2063 | */ | ||
| 2064 | 62 | inline void setNumberOfMatrix(const std::size_t number) { m_matrices.resize(number); } | |
| 2065 | |||
| 2066 | /** | ||
| 2067 | * \brief Set the number of vectors. | ||
| 2068 | */ | ||
| 2069 | 16 | inline void setNumberOfVector(const std::size_t number) { m_vectors.resize(number); } | |
| 2070 | |||
| 2071 | ///@} | ||
| 2072 | ///@name Protected Access | ||
| 2073 | ///@{ | ||
| 2074 | |||
| 2075 | ///@} | ||
| 2076 | ///@name Protected Inquiry | ||
| 2077 | ///@{ | ||
| 2078 | |||
| 2079 | ///@} | ||
| 2080 | ///@name Protected LifeCycle | ||
| 2081 | ///@{ | ||
| 2082 | |||
| 2083 | ///@} | ||
| 2084 | private: | ||
| 2085 | ///@name Private static Member Variables | ||
| 2086 | ///@{ | ||
| 2087 | |||
| 2088 | ///@} | ||
| 2089 | ///@name Private member Variables | ||
| 2090 | ///@{ | ||
| 2091 | |||
| 2092 | /// Name of the current linear problem | ||
| 2093 | std::string m_name; | ||
| 2094 | |||
| 2095 | /// The Model owner of this linear problem | ||
| 2096 | Model* mOwnerModel; | ||
| 2097 | |||
| 2098 | /// Id of the problem if multiple problem (default value = 0). | ||
| 2099 | std::size_t m_identifier_problem = 0; | ||
| 2100 | |||
| 2101 | ///@} | ||
| 2102 | ///@name Private Operations | ||
| 2103 | ///@{ | ||
| 2104 | |||
| 2105 | /** | ||
| 2106 | * @brief Assembly loop when some support dof are duplicated | ||
| 2107 | * This function is called when some support dof are duplicated. It's only the loop over all the support | ||
| 2108 | * element. | ||
| 2109 | */ | ||
| 2110 | void m_duplicateSupportDofAssemblyLoop(int rank, ElementType& eltType, felInt ielGeo, std::vector<Point*>& elemPoint, std::vector<felInt>& elemIdPoint, FlagMatrixRHS flagMatrixRHS); | ||
| 2111 | |||
| 2112 | /** | ||
| 2113 | * @brief Assembly loop for boundary condition when some support dof are duplicated | ||
| 2114 | * This function is called when some support dof are duplicated. It's only the loop over all the support | ||
| 2115 | * element. | ||
| 2116 | */ | ||
| 2117 | void m_duplicateSupportDofAssemblyLoopBoundaryCondition(int rank, ElementType& eltType, felInt ielGeoByType, std::vector<Point*>& elemPoint, std::vector<felInt>& elemIdPoint, FlagMatrixRHS flagMatrixRHS); | ||
| 2118 | |||
| 2119 | /** | ||
| 2120 | * @brief Helper function for imposing essential boundary condition | ||
| 2121 | */ | ||
| 2122 | template<DirichletApplicationOptions::Values> | ||
| 2123 | void applyEssentialBoundaryConditionHelper(FlagMatrixRHS flagMatrixRHS); | ||
| 2124 | |||
| 2125 | /** | ||
| 2126 | * @brief Apply essential boundary condition via penalization | ||
| 2127 | */ | ||
| 2128 | void applyEssentialBoundaryConditionViaPenalizationOnBC(FlagMatrixRHS flagMatrixRHS, const BoundaryCondition* const BC); | ||
| 2129 | |||
| 2130 | /** | ||
| 2131 | * @brief Apply essential boundary condition via symmetric pseudo elimination | ||
| 2132 | */ | ||
| 2133 | void applyEssentialBoundaryConditionViaSymmetricPseudoEliminationOnBC(FlagMatrixRHS flagMatrixRHS, const BoundaryCondition* const BC, std::vector<felInt>& rows); | ||
| 2134 | |||
| 2135 | ///@} | ||
| 2136 | ///@name Private Access | ||
| 2137 | ///@{ | ||
| 2138 | |||
| 2139 | ///@} | ||
| 2140 | ///@name Private Inquiry | ||
| 2141 | ///@{ | ||
| 2142 | |||
| 2143 | ///@} | ||
| 2144 | #ifdef FELISCE_WITH_CVGRAPH | ||
| 2145 | // Many functions and variables used with CVGraph that should be moved into CVGraphInterface | ||
| 2146 | public: | ||
| 2147 | ///@name Operations | ||
| 2148 | ///@{ | ||
| 2149 | |||
| 2150 | void setValueMatrixBD(felInt ielSupportDof); | ||
| 2151 | void computeResidualOnDofs( PetscVector& residual, PetscVector& stressOut, PetscVector& seqStressOut, std::size_t iConn); | ||
| 2152 | void sendInitialCondition (std::size_t iConn); | ||
| 2153 | void applyOnlyCVGBoundaryCondition(); | ||
| 2154 | void assembleRHSOnlyCVGraph(); | ||
| 2155 | void prepareResidual(std::size_t iConn); | ||
| 2156 | void sumOnBoundaryCVGraph(PetscVector& v, PetscVector& b, const DofBoundary& dofBD); | ||
| 2157 | |||
| 2158 | virtual void cvgAddExternalResidualToRHS(); | ||
| 2159 | virtual void cvgraphFinalizeEssBC(); | ||
| 2160 | |||
| 2161 | ✗ | virtual void readData() {}; | |
| 2162 | ✗ | virtual void assembleMassBoundaryAndInitKSP( std::size_t /*iConn*/ ) { FEL_ERROR("You need to implement this function in this linear problem"); } | |
| 2163 | ✗ | virtual void cvgraphNaturalBC(felInt /*iel*/) {}; | |
| 2164 | |||
| 2165 | template<class theClass> | ||
| 2166 | void assembleMassBoundaryAndInitKSP( void (theClass::*functionOfTheLoop)( felInt ), | ||
| 2167 | const std::vector<felInt> & labels, | ||
| 2168 | void (theClass::*initPerElementType)(), | ||
| 2169 | void (theClass::*updateFunction)(const std::vector<Point*>&,const std::vector<int>&), | ||
| 2170 | std::size_t iBD); | ||
| 2171 | |||
| 2172 | template<class theClass> | ||
| 2173 | void assembleMassBoundaryOnly( void (theClass::*functionOfTheLoop)( felInt ), | ||
| 2174 | const std::vector<felInt> & labels, | ||
| 2175 | void (theClass::*initPerElementType)(), | ||
| 2176 | void (theClass::*updateFunction)(const std::vector<Point*>&,const std::vector<int>&), | ||
| 2177 | DofBoundary &dofBD, PetscMatrix&massMatrix); | ||
| 2178 | |||
| 2179 | ///@} | ||
| 2180 | ///@name Access | ||
| 2181 | ///@{ | ||
| 2182 | |||
| 2183 | ✗ | inline std::vector<DofBoundary>& dofBDVec() { return m_dofBD; } | |
| 2184 | ✗ | inline std::vector<PetscMatrix>& massBDVec() { return m_massBD; } | |
| 2185 | ✗ | inline std::vector<KSPInterface>& kspMassBDVec() { return m_kspMassBD; } | |
| 2186 | ✗ | inline DofBoundary& dofBD(std::size_t iBD) { return m_dofBD[iBD]; }; | |
| 2187 | ✗ | inline cvgMainSlave*& slave() { return m_slave; } | |
| 2188 | |||
| 2189 | ///@} | ||
| 2190 | protected: | ||
| 2191 | ///@name Protected member Variables | ||
| 2192 | ///@{ | ||
| 2193 | |||
| 2194 | std::vector<felInt> m_globPosColumn; | ||
| 2195 | std::vector<felInt> m_globPosRow; | ||
| 2196 | std::vector<double> m_matrixValues; | ||
| 2197 | DofBoundary* m_auxiliaryDofBD = nullptr; ///< an auxiliary pointer to a DofBoundary to be used in setValueMatrixBD() | ||
| 2198 | |||
| 2199 | std::vector<KSPInterface> m_kspMassBD; | ||
| 2200 | std::vector<PetscMatrix> m_massBD; | ||
| 2201 | PetscVector m_stressOut, m_seqStressOut; | ||
| 2202 | PetscMatrix m_auxiliaryMatrix; | ||
| 2203 | |||
| 2204 | std::string m_cvgDirichletVariable; | ||
| 2205 | |||
| 2206 | std::vector<DofBoundary> m_dofBD = std::vector<DofBoundary>(1, DofBoundary()); | ||
| 2207 | |||
| 2208 | ///@} | ||
| 2209 | private: | ||
| 2210 | ///@name Private member Variables | ||
| 2211 | ///@{ | ||
| 2212 | |||
| 2213 | cvgMainSlave* m_slave = nullptr; | ||
| 2214 | |||
| 2215 | ///@} | ||
| 2216 | ///@name Operations | ||
| 2217 | ///@{ | ||
| 2218 | |||
| 2219 | void sendZero(std::size_t iConn); | ||
| 2220 | |||
| 2221 | ///@} | ||
| 2222 | #endif | ||
| 2223 | }; | ||
| 2224 | ///@} | ||
| 2225 | ///@name Type Definitions | ||
| 2226 | ///@{ | ||
| 2227 | |||
| 2228 | ///@} | ||
| 2229 | } /* namespace felisce.*/ | ||
| 2230 | |||
| 2231 | |||
| 2232 | #include "linearProblem_template.hpp" | ||
| 2233 | |||
| 2234 | #endif // LINEAR_PROBLEM_HPP | ||
| 2235 |